Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QFA72_RS26390 Genome accession   NZ_CP123780
Coordinates   6007550..6009763 (+) Length   737 a.a.
NCBI ID   WP_280933180.1    Uniprot ID   -
Organism   Streptomyces sp. SH5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6002550..6014763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS26365 (QFA72_26365) - 6002899..6003132 (-) 234 WP_189525640.1 Lrp/AsnC ligand binding domain-containing protein -
  QFA72_RS26370 (QFA72_26370) - 6003352..6004332 (+) 981 WP_189525641.1 thiamine-phosphate kinase -
  QFA72_RS26375 (QFA72_26375) thiD 6004350..6005159 (+) 810 WP_280933176.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QFA72_RS26380 (QFA72_26380) rpmB 6005310..6005495 (-) 186 WP_006127872.1 50S ribosomal protein L28 -
  QFA72_RS26385 (QFA72_26385) - 6005752..6007494 (+) 1743 WP_280933178.1 DAK2 domain-containing protein -
  QFA72_RS26390 (QFA72_26390) recG 6007550..6009763 (+) 2214 WP_280933180.1 ATP-dependent DNA helicase RecG Machinery gene
  QFA72_RS26395 (QFA72_26395) rsmD 6009901..6010485 (+) 585 WP_280933182.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QFA72_RS26400 (QFA72_26400) coaD 6010512..6010991 (+) 480 WP_280935358.1 pantetheine-phosphate adenylyltransferase -
  QFA72_RS26405 (QFA72_26405) - 6011108..6012229 (+) 1122 WP_280933184.1 ATP synthase F0 subunit B -
  QFA72_RS26410 (QFA72_26410) - 6012399..6013070 (+) 672 WP_032789164.1 DUF177 domain-containing protein -
  QFA72_RS26415 (QFA72_26415) rpmF 6013073..6013246 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  QFA72_RS26420 (QFA72_26420) rnc 6013266..6014090 (+) 825 WP_006127880.1 ribonuclease III -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 80189.72 Da        Isoelectric Point: 5.9890

>NTDB_id=752697 QFA72_RS26390 WP_280933180.1 6007550..6009763(+) (recG) [Streptomyces sp. SH5]
MDRVSSFDEPLKKLLGGATAKVMAEHLDLHTVGDLLHHYPRRYEERGKLTALADLPLDEHVTVVAQVADARILTFNNGRG
KRLEVTLTDGSGRLQLVFFGHGVHKPHKELLPGRQAMFAGKVSVFNRRMQLAHPTYQLLDVSDADEATEAVDAFAGRLLP
IYPACKQLDSWRIAKAVDAVLPSAQDAVDPLPASLREGRGFTPLPEALLKVHRPQTKADIEDAKARLKWDEAFVLQVALA
RRRYADTQLPAVARRPVADGLLDAFDAKLPFTLTEGQEKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLTVVDA
GGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSEQGTKVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAKDK
PHFLARAWERVREEVENGHQAYVVCPRIGDDAEEAEGKKGKAKKKTAEEDGDKRPPLAVLEIADELRRGTLAGLTVEVLH
GRMHPDEKDDVMRRFAAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEAHEAS
PARARLSAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIDDEEVIAAAREEAVAIVAADPELEHLPELRT
VLAALLDKEREEYLDKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=752697 QFA72_RS26390 WP_280933180.1 6007550..6009763(+) (recG) [Streptomyces sp. SH5]
ATGGATCGCGTGTCCTCGTTCGATGAACCTCTGAAGAAGCTGCTCGGCGGAGCCACCGCGAAGGTGATGGCCGAACACCT
CGACCTGCACACGGTCGGTGATCTGCTGCACCACTACCCGCGGCGGTACGAGGAGCGCGGCAAGCTGACCGCGCTGGCCG
ACCTCCCGCTGGACGAGCACGTCACGGTTGTCGCCCAGGTCGCCGACGCCCGGATCCTGACGTTCAACAACGGCCGGGGA
AAGCGCCTGGAGGTCACCCTCACCGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCCACGGCGTCCACAAGCCGCA
CAAGGAGCTGCTGCCGGGCCGTCAGGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGCAGGATGCAGCTGGCCCACC
CCACGTACCAACTGCTCGACGTCTCCGACGCCGACGAGGCCACCGAGGCCGTGGACGCCTTCGCCGGACGGCTGCTGCCG
ATCTACCCCGCGTGCAAGCAGCTCGATTCCTGGCGGATCGCCAAGGCCGTGGACGCCGTCCTGCCCAGCGCGCAGGACGC
GGTGGACCCGCTGCCCGCCTCCCTGCGCGAGGGGCGCGGCTTCACCCCGCTGCCCGAGGCGCTGCTCAAGGTGCACCGGC
CGCAGACCAAGGCGGACATCGAGGACGCCAAGGCCCGCCTCAAATGGGACGAGGCGTTCGTCCTCCAGGTCGCCCTGGCC
CGCCGCCGGTACGCCGACACCCAGCTGCCCGCCGTCGCCCGCCGCCCCGTCGCGGACGGCCTGCTGGACGCCTTCGACGC
CAAGCTGCCCTTCACCCTCACCGAGGGACAGGAGAAGGTCAGCAAGGAGATCTTCGACGACCTCGCCACCGAGCACCCGA
TGCACCGGCTCCTCCAGGGCGAGGTGGGTTCGGGCAAGACGATGGTGGCGCTGCGCGCGATGCTCACCGTGGTCGACGCG
GGCGGCCAGGCCGCGATGCTCGCCCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCGATCACCGAGATGATGGGCGA
GCTGGCCGAGGGCGGCATGCTGGGCGGCTCGGAGCAGGGCACCAAGGTCGTCCTGCTCACCGGCTCCATGGGCACGGCCG
CCCGCCGTCAGGCCCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTCATCGGCACCCACGCCCTCATCGAGGACAAG
GTCCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAACAGCACCGCTTCGGCGTCGAACAGCGCGACGCACTGCGCTC
CAAGGGGAAGCAGCCGCCCCACCTGCTCGTCATGACCGCCACACCCATTCCCCGTACGGTCGCGATGACGGTCTTCGGCG
ACCTGGAGACCTCCGTCCTGGACCAGCTCCCGGCCGGACGCTCCCCGATCGCCAGCCATGTCGTCCCCGCCAAGGACAAG
CCGCACTTCCTCGCCCGCGCCTGGGAACGCGTCCGCGAGGAGGTGGAGAACGGCCACCAGGCGTATGTGGTCTGCCCCCG
CATCGGCGACGACGCGGAGGAGGCCGAGGGGAAGAAGGGCAAGGCGAAGAAGAAGACCGCCGAGGAGGACGGCGACAAAC
GCCCGCCGCTCGCCGTCCTGGAGATCGCCGACGAGCTGCGCCGGGGCACGCTGGCCGGGCTGACCGTCGAGGTGCTGCAC
GGCCGTATGCACCCCGACGAGAAGGACGACGTCATGCGCCGGTTCGCCGCCGGGGACGTCGACGTCCTGGTCGCGACCAC
CGTCATCGAGGTCGGCGTCAACGTCCCCAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGC
TCCACCAGCTCCGCGGCCGCGTCGGCCGGGGCTCCGCCCCCGGACTCTGCCTGCTGGTCAGCGAGGCCCACGAGGCGAGC
CCCGCCCGCGCCCGCCTCTCCGCCGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGGATCGACCTGGAGCAGCGCCG
CGAGGGCGATGTGCTGGGCCAGGCCCAGTCCGGGGTGCGCTCCTCGCTGCGGATGCTCACCGTCATCGACGACGAGGAGG
TCATCGCCGCCGCCCGAGAGGAGGCCGTGGCGATCGTCGCCGCCGACCCGGAGCTGGAACACCTGCCGGAGCTGCGCACG
GTGCTGGCCGCCCTGCTGGACAAGGAGCGCGAGGAGTATCTCGACAAGGGGTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-714)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-139)

Helicase conserved C-terminal domain (Helicase_C)

(548-624)

DEAD/DEAH box helicase (DEAD)

(295-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.649

94.437

0.365