Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QFA72_RS17270 Genome accession   NZ_CP123780
Coordinates   3945566..3946696 (-) Length   376 a.a.
NCBI ID   WP_189518981.1    Uniprot ID   A0ABW6ECJ5
Organism   Streptomyces sp. SH5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3940566..3951696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS17260 (QFA72_17260) gyrB 3942504..3944585 (-) 2082 WP_189518983.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QFA72_RS17265 (QFA72_17265) - 3944985..3945488 (-) 504 WP_189519285.1 DciA family protein -
  QFA72_RS17270 (QFA72_17270) recF 3945566..3946696 (-) 1131 WP_189518981.1 DNA replication/repair protein RecF Machinery gene
  QFA72_RS17275 (QFA72_17275) gnd 3946763..3947647 (-) 885 WP_280931260.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QFA72_RS17280 (QFA72_17280) dnaN 3947808..3948938 (-) 1131 WP_032764581.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40839.48 Da        Isoelectric Point: 6.8623

>NTDB_id=752676 QFA72_RS17270 WP_189518981.1 3945566..3946696(-) (recF) [Streptomyces sp. SH5]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGEDVG
AERTRDELYEQLIAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=752676 QFA72_RS17270 WP_189518981.1 3945566..3946696(-) (recF) [Streptomyces sp. SH5]
ATGCACGTCACGCACCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGCCAGGGCAAGACCAATCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGCG
TCTCCTCGGACGCCCCGCTCGTGCGGATGGGCGCGGAGCGGGCGGTGATCCGGGCGGCGGTGACCCAGGGCGAGCGCTCG
CAGCTGGTCGAGCTGGAGCTGAACCCGGGCCGCGCGAACCGGGCCCGTATCAACAGGTCCTCGCAGGTCAGACCCCGTGA
CGTGCTCGGCATCGTACGGACCGTGCTGTTCGCTCCGGAGGATCTGGCGCTGGTCAAGGGCGATCCCGGCGAGCGGCGGC
GGTTTCTGGACGAGCTGGTCACCGCGCGCTCGCCCCGGATGGCCGGGGTCCGTTCCGACTACGAACGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCGCGACGGCACGGCGGCCGCTCGATGGATCTGTCCACCCTGGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAGCTGCTCGCGCAGCGCCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTGGCGCCGGGCGGTGGTCCGGTCGCGCTGGAGTACCGCAGCTCGGTCGGCGAGGACGTGGGT
GCCGAGCGCACCCGCGACGAGCTGTACGAGCAGTTGATCGCGGCGCTCGCGGGGGTCCGGAAGCAGGAGATCGAGCGGGG
CGTGACCCTGGTCGGTCCGCACCGCGACGATCTGCTGCTGGGCCTGCGCGGGATGCCGGCCAAGGGGTACGCGAGTCATG
GCGAGTCGTGGAGTTACGCGCTGGCGCTGCGGCTCGCCAGTTACGAGCTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGATGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCCGGCGAGCAGGT
GCTGGTGACGGCCGCGGTGGCGGAGGACGTGCCGGGGGTGCTGGCGGGGACGCGGTACGCGGTGACCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.808

97.074

0.367