Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OJ967_RS06660 Genome accession   NZ_CP110132
Coordinates   1390372..1392189 (+) Length   605 a.a.
NCBI ID   WP_063577054.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Q2H1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385372..1397189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ967_RS06640 (OJ967_06640) spxA 1385742..1386137 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  OJ967_RS06645 (OJ967_06645) mecA 1386632..1387300 (+) 669 WP_034314498.1 adaptor protein MecA -
  OJ967_RS06650 (OJ967_06650) cls 1387391..1388899 (+) 1509 WP_264640555.1 cardiolipin synthase -
  OJ967_RS06655 (OJ967_06655) - 1388996..1390204 (+) 1209 WP_264640556.1 competence protein CoiA -
  OJ967_RS06660 (OJ967_06660) pepF 1390372..1392189 (+) 1818 WP_063577054.1 oligoendopeptidase F Regulator
  OJ967_RS06665 (OJ967_06665) - 1393119..1394012 (-) 894 WP_082201283.1 ClpXP adapter SpxH family protein -
  OJ967_RS06670 (OJ967_06670) - 1394009..1394413 (-) 405 WP_053534150.1 globin -
  OJ967_RS06675 (OJ967_06675) - 1394647..1395306 (-) 660 WP_264640557.1 lytic transglycosylase domain-containing protein -
  OJ967_RS06680 (OJ967_06680) - 1395338..1395916 (-) 579 WP_264640558.1 CYTH domain-containing protein -
  OJ967_RS06685 (OJ967_06685) - 1396236..1396856 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69795.21 Da        Isoelectric Point: 4.7412

>NTDB_id=752582 OJ967_RS06660 WP_063577054.1 1390372..1392189(+) (pepF) [Peribacillus frigoritolerans strain Q2H1]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYGLNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=752582 OJ967_RS06660 WP_063577054.1 1390372..1392189(+) (pepF) [Peribacillus frigoritolerans strain Q2H1]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAGCTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCACAGGCATCAGAAGTACTCGATGCATCGGGTAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGGAATTAGATGAACTTCATATGTATGATTTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGGACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATATTTGTAGCGGAAGTTGCATCCAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCGATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGCTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAAGCTCAA
AATGGGGAAGCGTTGACGGCGGATATGCTTACTAAGGAATATTATGGGCTGAACAAGAAATACTTTGGCGAAAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498