Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OKC48_RS09190 Genome accession   NZ_CP110130
Coordinates   1929225..1929800 (-) Length   191 a.a.
NCBI ID   WP_265222168.1    Uniprot ID   -
Organism   Methylorubrum extorquens strain NBC_00404     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1924225..1934800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKC48_RS09170 (OKC48_09170) - 1924361..1926463 (-) 2103 WP_265222169.1 TonB-dependent siderophore receptor -
  OKC48_RS09175 (OKC48_09175) panC 1926876..1927733 (-) 858 WP_012253691.1 pantoate--beta-alanine ligase -
  OKC48_RS09180 (OKC48_09180) - 1927811..1928170 (-) 360 WP_012253692.1 hypothetical protein -
  OKC48_RS09185 (OKC48_09185) - 1928243..1928848 (-) 606 WP_003603578.1 helix-turn-helix domain-containing protein -
  OKC48_RS09190 (OKC48_09190) ssb 1929225..1929800 (-) 576 WP_265222168.1 single-stranded DNA-binding protein Machinery gene
  OKC48_RS09195 (OKC48_09195) - 1930035..1931051 (-) 1017 WP_265222167.1 NADP-dependent oxidoreductase -
  OKC48_RS09200 (OKC48_09200) - 1931144..1931530 (+) 387 WP_265222166.1 DUF4174 domain-containing protein -
  OKC48_RS09205 (OKC48_09205) - 1931604..1932170 (-) 567 WP_012253696.1 hypothetical protein -
  OKC48_RS09210 (OKC48_09210) - 1932400..1933173 (+) 774 WP_238508157.1 phosphodiester glycosidase family protein -
  OKC48_RS09215 (OKC48_09215) - 1933328..1934446 (-) 1119 WP_265222165.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20214.97 Da        Isoelectric Point: 6.0203

>NTDB_id=752558 OKC48_RS09190 WP_265222168.1 1929225..1929800(-) (ssb) [Methylorubrum extorquens strain NBC_00404]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSSRS
GGGGGGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=752558 OKC48_RS09190 WP_265222168.1 1929225..1929800(-) (ssb) [Methylorubrum extorquens strain NBC_00404]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAATCGGGCGCGGAGAAGTACACCACCGAAGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGCGGCGGCGGCGGCGGCGACTTCGCGGGCGAGGACGAGGGCGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTGGTGATCGCGGCGGCGACCGCGGCGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGTGGCGGTGGCGGTGGCGGTGGCGGCGATCGCCGGCCCTCCTCGGGCGGCGGCGCCAAGCCGAACTACGACCTCGACGA
CGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.179

100

0.482
  ssb Vibrio cholerae strain A1552

48.128

97.906

0.471
  ssb Neisseria gonorrhoeae MS11

40.426

98.429

0.398
  ssb Neisseria meningitidis MC58

39.894

98.429

0.393