Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OH720_RS27735 Genome accession   NZ_CP110128
Coordinates   6167206..6168573 (-) Length   455 a.a.
NCBI ID   WP_180204530.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6162206..6173573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS27710 (OH720_27720) - 6162476..6163165 (+) 690 WP_272603619.1 GntR family transcriptional regulator -
  OH720_RS27715 (OH720_27725) yjiA 6163162..6164133 (-) 972 WP_272603620.1 GTPase -
  OH720_RS27720 (OH720_27730) - 6164286..6164483 (-) 198 WP_008058222.1 YbdD/YjiX family protein -
  OH720_RS27725 (OH720_27735) - 6164499..6166565 (-) 2067 WP_272603621.1 carbon starvation CstA family protein -
  OH720_RS27730 (OH720_27740) - 6166717..6167085 (+) 369 WP_272603622.1 PilZ domain-containing protein -
  OH720_RS27735 (OH720_27745) radA 6167206..6168573 (-) 1368 WP_180204530.1 DNA repair protein RadA Machinery gene
  OH720_RS27740 (OH720_27750) mscL 6169149..6169562 (+) 414 WP_272603623.1 large-conductance mechanosensitive channel protein MscL -
  OH720_RS27745 (OH720_27755) - 6169593..6170369 (-) 777 WP_272603624.1 ferredoxin--NADP reductase -
  OH720_RS27750 (OH720_27760) - 6170690..6171421 (+) 732 WP_272603625.1 autoinducer binding domain-containing protein -
  OH720_RS27755 (OH720_27765) - 6171587..6172711 (+) 1125 WP_272603626.1 methyltransferase -
  OH720_RS27760 (OH720_27770) - 6172787..6172954 (-) 168 WP_272603627.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48760.21 Da        Isoelectric Point: 6.8987

>NTDB_id=752544 OH720_RS27735 WP_180204530.1 6167206..6168573(-) (radA) [Pseudomonas sp. WJP1]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEVPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPRVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=752544 OH720_RS27735 WP_180204530.1 6167206..6168573(-) (radA) [Pseudomonas sp. WJP1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTTCCCAAGTGGGCCGGGCAATGCGGCGAATG
CGGCGCCTGGAACACCCTCACGGAAACCATGGTGGAAAGTGGCGGGGCAGCGGCGCCCAGCGGTCGTACCGGCTGGACCG
GCCAGCAGGCGCAAATCAAGACCCTGGCTGAAGTCAGTGTCGAGGAAGTCCCGCGTTTCTCCACGGCTTCCAGTGAGCTT
GACCGGGTGTTGGGTGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGCGGTGATCCCGGCATCGGCAAGTCCACCAT
TCTGTTGCAAACCTTGTGCAATCTCGCCAAGAGCATGCCGGCGCTGTATGTCACGGGCGAAGAGTCGCAGCAGCAGGTGG
CCATGCGCGCCCGACGCCTGGGGCTGCCACAGGATCAGCTGCGGGTCATGACCGAAACCTGCATTGAAACCATCATTGCT
ACTGCCCGGCTGGAAAAGCCCCGGGTCATGGTAATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCACC
GGGCGGTGTGTCTCAGGTTCGCGAAAGTGCTGCACTGCTGGTGCGTTACGCCAAGCAGAGTGGCACCGCGATTTTCCTGG
TGGGGCACGTGACCAAGGAGGGCGCGCTGGCGGGGCCCCGAGTACTGGAGCACATGGTCGACACCGTGCTGTATTTTGAA
GGCGAATCAGACGGGCGCCTGCGCTTGTTGCGCGCGGTAAAAAATCGTTTCGGCGCGGTTAACGAGCTGGGCGTGTTCGG
GATGACCGACAAGGGCCTGAAAGAAGTTTCCAATCCATCGGCGATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCGACATGGGAAGGCACACGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTCGATGACAGTCACCTGGCC
AATCCGCGCCGGGTAACCCTGGGCCTGGATCAGAACCGGCTGGCAATGTTGCTGGCAGTCTTGCACCGGCACGGCGGCAT
ACCCACCCACGACCAGGATGTGTTTCTCAACGTGGTCGGTGGGGTGAAGGTACTGGAAACGGCCTCTGACCTGGCTTTGA
TGGCAGCCGTCATGTCCAGTTTGCGCAACCGGCCGCTGCCCCATGATCTGCTGGTGTTCGGTGAGGTCGGTCTGTCCGGC
GAAGTGCGGCCGGTGCCAAGCGGTCAGGAGCGCCTGAAGGAAGCGGCCAAGCATGGTTTCAAACGTGCCATCGTGCCCAA
GGGCAATGCACCGAAAGAGGCGCCGCCGGGTTTGCAGATCATCGCTGTCACCCGTCTGGAGCAGGCCCTCGACGCGCTCT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468