Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SFSGTM_RS13560 Genome accession   NZ_AP021881
Coordinates   2760889..2761305 (+) Length   138 a.a.
NCBI ID   WP_269780058.1    Uniprot ID   A0A809RM96
Organism   Sulfuriferula nivalis strain SGTM     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2755889..2766305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS13535 (SFSGTM_26170) ccsB 2756608..2757750 (+) 1143 WP_162085623.1 c-type cytochrome biogenesis protein CcsB -
  SFSGTM_RS13540 (SFSGTM_26180) hemL 2757823..2759103 (-) 1281 WP_162085624.1 glutamate-1-semialdehyde 2,1-aminomutase -
  SFSGTM_RS13545 (SFSGTM_26190) thiE 2759104..2759730 (-) 627 WP_162085625.1 thiamine phosphate synthase -
  SFSGTM_RS13550 (SFSGTM_26200) - 2759727..2760545 (-) 819 WP_162085626.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  SFSGTM_RS13555 (SFSGTM_26210) - 2760640..2760792 (+) 153 WP_198420564.1 rubredoxin -
  SFSGTM_RS13560 (SFSGTM_26220) pilG 2760889..2761305 (+) 417 WP_269780058.1 response regulator Regulator
  SFSGTM_RS13565 (SFSGTM_26230) - 2761319..2761681 (+) 363 WP_162085628.1 response regulator -
  SFSGTM_RS13570 (SFSGTM_26240) - 2761699..2762208 (+) 510 WP_162085629.1 chemotaxis protein CheW -
  SFSGTM_RS13575 (SFSGTM_26250) - 2762264..2764393 (+) 2130 WP_162085630.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15342.77 Da        Isoelectric Point: 7.7822

>NTDB_id=75245 SFSGTM_RS13560 WP_269780058.1 2760889..2761305(+) (pilG) [Sulfuriferula nivalis strain SGTM]
MADTNDLNGIKVMVIDDSNTIRRSAEIFLKQAGCEIILAEDGFDALAKITDRQPDIIFVDVMMPRLDGYQTCSLIKKNSR
FKSTPVIMLSSKDGLFDKARGRIVGSNEYLTKPFTKDSLLSTVQRYVPASPAIQLIPN

Nucleotide


Download         Length: 417 bp        

>NTDB_id=75245 SFSGTM_RS13560 WP_269780058.1 2760889..2761305(+) (pilG) [Sulfuriferula nivalis strain SGTM]
GTGGCAGACACCAATGATTTAAATGGCATTAAAGTGATGGTGATAGATGACAGCAACACCATACGCAGAAGTGCCGAGAT
TTTTTTGAAGCAAGCTGGTTGTGAGATCATCCTTGCTGAAGATGGTTTTGATGCCCTTGCTAAAATAACAGACCGCCAAC
CCGACATTATTTTCGTGGATGTCATGATGCCTCGTTTAGATGGCTATCAGACCTGCTCACTCATTAAGAAAAACAGCCGG
TTTAAATCAACACCAGTCATTATGCTATCTAGTAAAGATGGATTATTCGATAAAGCCCGTGGACGCATCGTTGGCTCAAA
TGAATACCTAACCAAACCTTTTACCAAAGACAGTCTGCTCAGTACCGTACAGCGCTATGTTCCAGCCAGCCCCGCGATCC
AACTAATCCCTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809RM96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.415

89.13

0.565

Multiple sequence alignment