Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OKV75_RS25420 Genome accession   NZ_CP110109
Coordinates   4973341..4973943 (-) Length   200 a.a.
NCBI ID   WP_071714821.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain TG-5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4968341..4978943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS25400 dnaD 4968663..4969370 (+) 708 WP_000728532.1 DNA replication protein DnaD -
  OKV75_RS25405 nth 4969386..4970033 (+) 648 WP_000933035.1 endonuclease III -
  OKV75_RS25410 - 4970037..4970555 (+) 519 WP_264647828.1 YpoC family protein -
  OKV75_RS25415 - 4970581..4973274 (-) 2694 WP_065228536.1 PBP1A family penicillin-binding protein -
  OKV75_RS25420 recU 4973341..4973943 (-) 603 WP_071714821.1 Holliday junction resolvase RecU Machinery gene
  OKV75_RS25425 - 4974047..4975072 (+) 1026 WP_065228537.1 DUF2515 domain-containing protein -
  OKV75_RS27940 - 4975224..4975403 (-) 180 WP_001987054.1 hypothetical protein -
  OKV75_RS25430 - 4975489..4975731 (+) 243 WP_001252036.1 hypothetical protein -
  OKV75_RS25435 - 4975747..4976091 (+) 345 WP_000786937.1 YppE family protein -
  OKV75_RS25440 - 4976124..4976315 (-) 192 WP_000242652.1 YppF family protein -
  OKV75_RS25445 - 4976493..4977050 (+) 558 WP_000487718.1 YppG family protein -
  OKV75_RS25450 - 4977206..4977628 (+) 423 WP_000546292.1 CotD family spore coat protein -
  OKV75_RS25455 - 4977685..4978239 (+) 555 WP_097946142.1 DUF1273 domain-containing protein -
  OKV75_RS25460 gpsB 4978337..4978672 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23311.51 Da        Isoelectric Point: 9.4336

>NTDB_id=752402 OKV75_RS25420 WP_071714821.1 4973341..4973943(-) (recU) [Bacillus thuringiensis strain TG-5]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDDFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=752402 OKV75_RS25420 WP_071714821.1 4973341..4973943(-) (recU) [Bacillus thuringiensis strain TG-5]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGATTTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635