Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OKV75_RS24090 Genome accession   NZ_CP110109
Coordinates   4730830..4731153 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain TG-5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4725830..4736153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS24065 - 4726104..4727390 (+) 1287 WP_000247027.1 D-alanyl-D-alanine carboxypeptidase family protein -
  OKV75_RS24070 sipW 4727581..4728150 (+) 570 WP_000767802.1 signal peptidase I SipW -
  OKV75_RS24075 - 4728213..4728800 (+) 588 WP_000172852.1 CalY family protein -
  OKV75_RS24080 - 4728935..4729777 (+) 843 WP_264647809.1 DUF4047 domain-containing protein -
  OKV75_RS24085 calY 4730164..4730757 (+) 594 WP_000053715.1 biofilm matrix protein CalY -
  OKV75_RS24090 sinR 4730830..4731153 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  OKV75_RS24095 - 4731233..4731367 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  OKV75_RS24100 inhA1 4731710..4734100 (+) 2391 WP_001035940.1 M6 family metalloprotease immune inhibitor InhA1 -
  OKV75_RS24105 - 4734273..4735640 (+) 1368 WP_000028384.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=752400 OKV75_RS24090 WP_000578885.1 4730830..4731153(-) (sinR) [Bacillus thuringiensis strain TG-5]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=752400 OKV75_RS24090 WP_000578885.1 4730830..4731153(-) (sinR) [Bacillus thuringiensis strain TG-5]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692