Detailed information NTG0075239

Bioinformatically predicted

Overview

• Name: comL
• Type: Machinery gene
• Locus tag: SFSGTM_RS10120
• Genome accession: NZ_AP021881
• Coordinates: 2045110..2045901 (+)
• Length: 263 a.a.
• NCBI ID: WP_162085056.1
• Uniprot ID: A0A809RKC1
• Organism: Sulfuriferula nivalis strain SGTM
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2040110..2050901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SFSGTM_RS10085 (SFSGTM_19550)	flgA	2040126..2040806 (+)	681	WP_162085049.1	flagellar basal body P-ring formation chaperone FlgA	-
SFSGTM_RS10090 (SFSGTM_19560)	flgM	2040944..2041264 (+)	321	WP_162085050.1	flagellar biosynthesis anti-sigma factor FlgM	-
SFSGTM_RS10095 (SFSGTM_19570)	-	2041267..2041740 (+)	474	WP_162085051.1	flagellar protein FlgN	-
SFSGTM_RS10100 (SFSGTM_19580)	rimO	2041755..2043068 (-)	1314	WP_162085052.1	30S ribosomal protein S12 methylthiotransferase RimO	-
SFSGTM_RS10105 (SFSGTM_19590)	-	2043124..2043288 (+)	165	WP_162085053.1	hypothetical protein	-
SFSGTM_RS10110 (SFSGTM_19600)	pgeF	2043406..2044143 (-)	738	WP_162085054.1	peptidoglycan editing factor PgeF	-
SFSGTM_RS10115 (SFSGTM_19610)	rluD	2044140..2045111 (-)	972	WP_162085055.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
SFSGTM_RS10120 (SFSGTM_19620)	comL	2045110..2045901 (+)	792	WP_162085056.1	outer membrane protein assembly factor BamD	Machinery gene
SFSGTM_RS10125 (SFSGTM_19630)	-	2045905..2046573 (+)	669	WP_162085057.1	HAD family hydrolase	-
SFSGTM_RS10130 (SFSGTM_19640)	pcnB	2046580..2047920 (+)	1341	WP_162085058.1	polynucleotide adenylyltransferase PcnB	-
SFSGTM_RS10135 (SFSGTM_19650)	folK	2047913..2048428 (+)	516	WP_162085059.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
SFSGTM_RS10140 (SFSGTM_19660)	panB	2048435..2049220 (+)	786	WP_162085060.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
SFSGTM_RS10145 (SFSGTM_19670)	panC	2049217..2050044 (+)	828	WP_162085061.1	pantoate--beta-alanine ligase	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 30143.13 Da
• Isoelectric Point: 8.6624

>NTDB_id=75239 SFSGTM_RS10120 WP_162085056.1 2045110..2045901(+) (comL) [Sulfuriferula nivalis strain SGTM]
MKRILLVLLLVGLAGCSSTPTTNDETKNWSAQKIYAEAKDMLNSGSYEKAIKLFETLEARYPYGRYSQQAQLEVAYAYYK
DNEPVSAVAACDRFIKLHPNHPNVDYAYYLKGLSNFTEDQSFFARIADQDMTERDPRSASNSYASFQELSTRFPDSKYTP
DAIARMKYLIDALAMHEVHVAQYYYKRGAYVAAANRAQYALKTYPQAPANELGIAIMVRSYDALGTNDLRDDALRVLKLN
FPKSKYIAGNFDKTKPWWRFWEL

Nucleotide

• Length: 792 bp

>NTDB_id=75239 SFSGTM_RS10120 WP_162085056.1 2045110..2045901(+) (comL) [Sulfuriferula nivalis strain SGTM]
ATGAAACGAATTTTACTTGTTTTACTGCTCGTTGGGTTAGCTGGTTGCAGCAGCACCCCCACAACCAACGATGAAACCAA
AAATTGGTCTGCTCAAAAAATCTACGCTGAAGCCAAAGATATGTTGAATTCAGGTAGTTATGAGAAAGCGATCAAGCTAT
TTGAGACTCTGGAAGCGCGCTATCCTTATGGCCGTTATTCACAACAGGCGCAGCTTGAAGTCGCTTATGCATATTACAAA
GACAATGAACCGGTGTCTGCCGTTGCCGCTTGTGACCGTTTTATCAAGCTCCACCCCAATCATCCCAATGTTGATTATGC
CTACTATTTAAAAGGGCTATCCAACTTTACTGAAGATCAGAGCTTTTTCGCACGCATTGCTGATCAGGACATGACAGAGC
GCGATCCACGTTCTGCAAGTAATTCCTATGCATCATTTCAAGAACTATCGACCCGCTTTCCAGACAGCAAATACACACCT
GATGCTATTGCACGGATGAAATATTTGATTGATGCGCTGGCTATGCATGAGGTGCACGTTGCGCAATATTATTACAAACG
TGGCGCATACGTCGCTGCGGCAAACCGCGCTCAATATGCACTTAAAACCTATCCACAAGCACCTGCTAACGAACTGGGCA
TAGCCATCATGGTTCGTTCATATGATGCTTTAGGCACAAATGATTTACGTGACGATGCGCTGCGGGTTCTGAAGCTCAAT
TTCCCCAAAAGCAAATATATCGCTGGCAATTTTGACAAAACCAAACCCTGGTGGCGTTTCTGGGAATTATAA

Domains

Predicted by InterproScan.

• Outer membrane lipoprotein (YfiO) (30-233)

3D structure

• AlphaFold DB: A0A809RKC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comL	Neisseria meningitidis MC58	49.248	100	0.498
comL	Neisseria gonorrhoeae MS11	48.12	100	0.487