Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OKV75_RS17920 Genome accession   NZ_CP110109
Coordinates   3521779..3522063 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain TG-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3516779..3527063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS17885 tmk 3516971..3517597 (+) 627 WP_000677220.1 dTMP kinase -
  OKV75_RS17890 holB 3517633..3518616 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  OKV75_RS17895 - 3518622..3519449 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  OKV75_RS17900 yabA 3519464..3519814 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  OKV75_RS17905 - 3519897..3520637 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  OKV75_RS17910 - 3520624..3520914 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  OKV75_RS17915 rsmI 3520883..3521758 (+) 876 WP_000267824.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OKV75_RS17920 abrB 3521779..3522063 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OKV75_RS17925 metG 3522551..3524533 (+) 1983 WP_000134131.1 methionine--tRNA ligase -
  OKV75_RS17930 - 3524700..3525467 (+) 768 WP_000895840.1 TatD family hydrolase -
  OKV75_RS17935 rnmV 3525683..3526240 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=752385 OKV75_RS17920 WP_000843036.1 3521779..3522063(-) (abrB) [Bacillus thuringiensis strain TG-5]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=752385 OKV75_RS17920 WP_000843036.1 3521779..3522063(-) (abrB) [Bacillus thuringiensis strain TG-5]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851