Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OKV75_RS16180 Genome accession   NZ_CP110109
Coordinates   3156654..3158003 (-) Length   449 a.a.
NCBI ID   WP_065229564.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain TG-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3151654..3163003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS16145 - 3151818..3152513 (-) 696 WP_071713842.1 hypothetical protein -
  OKV75_RS16150 - 3152500..3153288 (-) 789 WP_071713843.1 hypothetical protein -
  OKV75_RS16155 - 3153320..3153889 (-) 570 WP_001211060.1 hypothetical protein -
  OKV75_RS16160 - 3154007..3154462 (-) 456 WP_002026570.1 hypothetical protein -
  OKV75_RS16165 hpf 3154760..3155302 (-) 543 WP_000671193.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OKV75_RS16170 cspC 3155626..3155823 (-) 198 WP_001990088.1 cold shock protein CspC -
  OKV75_RS16175 - 3155950..3156654 (-) 705 WP_071713846.1 ComF family protein -
  OKV75_RS16180 comFA 3156654..3158003 (-) 1350 WP_065229564.1 ATP-dependent helicase ComFA Machinery gene
  OKV75_RS16185 - 3158132..3159547 (-) 1416 WP_071713848.1 NlpC/P60 family protein -
  OKV75_RS16190 - 3159696..3160010 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  OKV75_RS16195 - 3160183..3161025 (-) 843 WP_000684727.1 DegV family protein -
  OKV75_RS16200 - 3161262..3161897 (+) 636 WP_071713849.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51019.84 Da        Isoelectric Point: 9.8784

>NTDB_id=752377 OKV75_RS16180 WP_065229564.1 3156654..3158003(-) (comFA) [Bacillus thuringiensis strain TG-5]
MLPGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKASKDVCQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWDGKLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKVRRGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKYPIFL
FVPHVRYIEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVVYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=752377 OKV75_RS16180 WP_065229564.1 3156654..3158003(-) (comFA) [Bacillus thuringiensis strain TG-5]
ATGCTACCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTGTGTGTACAAGGTGTAAAAAAGAAGGCTTCTAAAGATGTATGTCAGCGTTGTGGAAATATAGAACAGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAATTTGTTACAGTGGGACGGGAAGTT
GTCTACTGGTCAGAATCTGGCGGCACAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCAACCACGCATCAATTATTGCGTTACTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAAGTTAGAAGAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACGTACTTAAATAAAAAATATCCTATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAGTCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGTAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACAGTAAAAAATTTGCAAGTAGCGGTTTTAGGGGCGGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCGTTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.905

98.441

0.501
  comFA Latilactobacillus sakei subsp. sakei 23K

41.709

88.641

0.37