Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OKV75_RS11825 Genome accession   NZ_CP110109
Coordinates   2339345..2340091 (-) Length   248 a.a.
NCBI ID   WP_098833450.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain TG-5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2334345..2345091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS11805 dnaG 2335106..2336902 (-) 1797 WP_000528221.1 DNA primase -
  OKV75_RS11810 - 2336984..2337127 (-) 144 WP_000479733.1 hypothetical protein -
  OKV75_RS11815 - 2337763..2338575 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  OKV75_RS11820 - 2338605..2339237 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  OKV75_RS11825 recO 2339345..2340091 (-) 747 WP_098833450.1 DNA repair protein RecO Machinery gene
  OKV75_RS11830 - 2340125..2340268 (-) 144 WP_000883924.1 YqzL family protein -
  OKV75_RS11835 era 2340445..2341350 (-) 906 WP_001080230.1 GTPase Era -
  OKV75_RS11840 - 2341343..2341741 (-) 399 WP_001086285.1 cytidine deaminase -
  OKV75_RS11845 - 2341841..2342194 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  OKV75_RS11850 ybeY 2342191..2342661 (-) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  OKV75_RS11855 - 2342658..2344802 (-) 2145 WP_264648100.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28644.24 Da        Isoelectric Point: 8.0462

>NTDB_id=752367 OKV75_RS11825 WP_098833450.1 2339345..2340091(-) (recO) [Bacillus thuringiensis strain TG-5]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLYRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=752367 OKV75_RS11825 WP_098833450.1 2339345..2340091(-) (recO) [Bacillus thuringiensis strain TG-5]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTATATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552