Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SFSGTM_RS08875 Genome accession   NZ_AP021881
Coordinates   1800518..1801876 (-) Length   452 a.a.
NCBI ID   WP_162084845.1    Uniprot ID   A0A809S9L3
Organism   Sulfuriferula nivalis strain SGTM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795518..1806876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS08850 (SFSGTM_17150) - 1796058..1797446 (+) 1389 WP_162084840.1 MBL fold metallo-hydrolase -
  SFSGTM_RS08855 (SFSGTM_17160) - 1797458..1798726 (+) 1269 WP_162084841.1 DUF4010 domain-containing protein -
  SFSGTM_RS08860 (SFSGTM_17170) - 1798739..1799659 (+) 921 WP_162084842.1 DnaJ C-terminal domain-containing protein -
  SFSGTM_RS08865 (SFSGTM_17180) - 1799662..1799970 (+) 309 WP_162084843.1 chaperone modulator CbpM -
  SFSGTM_RS08870 (SFSGTM_17190) - 1800026..1800316 (-) 291 WP_162084844.1 hypothetical protein -
  SFSGTM_RS08875 (SFSGTM_17200) radA 1800518..1801876 (-) 1359 WP_162084845.1 DNA repair protein RadA Machinery gene
  SFSGTM_RS08880 - 1801912..1802025 (+) 114 WP_162084846.1 peptide chain release factor-like protein -
  SFSGTM_RS08885 arfB 1802175..1802597 (+) 423 WP_174237440.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  SFSGTM_RS08890 (SFSGTM_17210) - 1802717..1804345 (-) 1629 WP_162084465.1 IS66 family transposase -
  SFSGTM_RS08895 (SFSGTM_17220) tnpB 1804426..1804785 (-) 360 WP_162083704.1 IS66 family insertion sequence element accessory protein TnpB -
  SFSGTM_RS08900 - 1804782..1805087 (-) 306 WP_162083703.1 IS66 family insertion sequence element accessory protein TnpB -
  SFSGTM_RS08905 (SFSGTM_17230) - 1805146..1805991 (+) 846 WP_162084847.1 toll/interleukin-1 receptor domain-containing protein -
  SFSGTM_RS08910 (SFSGTM_17240) - 1805999..1806268 (+) 270 WP_162084848.1 hypothetical protein -
  SFSGTM_RS08915 - 1806295..1806600 (+) 306 WP_162083703.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48425.83 Da        Isoelectric Point: 6.7596

>NTDB_id=75236 SFSGTM_RS08875 WP_162084845.1 1800518..1801876(-) (radA) [Sulfuriferula nivalis strain SGTM]
MAKAKTLYTCTECGGSSTKWQGQCPHCDAWNTLVETLAESVTPSRYSALSVVSQVQTLGSVEAVEDERVLTTVDELDRVL
GGGVVKGGVVLIGGDPGVGKSTLLLQALTAMSQQHKTLYVSGEESARQIALRANRLQLDGEKLELLAEIQLEKILATLQA
HQPFIAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRFAKQSGTVIFLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTS
STFRLVRAIKNRFGAVNELGVFAMTDKGLKGVSNPSAIFLSGHRSDVPGSCVMVTQEGTRPLLVEIQALVESSPMPNPRR
LSVGLEQNRLAMLLAVLHRHAGLACHDQDVFINAVGGVRINEPAADLPLLLAIVSSFKNKAMPDKLVVFGEVGLAGEIRP
VQRGQERLREAAKLGFTLAIVPIANKPRQAIAGMEVIGVERLQDAVTYLRDA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=75236 SFSGTM_RS08875 WP_162084845.1 1800518..1801876(-) (radA) [Sulfuriferula nivalis strain SGTM]
ATGGCTAAAGCAAAAACGCTCTACACATGTACCGAATGTGGTGGTTCTTCGACCAAATGGCAAGGACAATGCCCGCATTG
TGATGCATGGAATACTCTGGTTGAAACGCTGGCTGAATCCGTTACACCTTCGCGTTACAGTGCGTTATCGGTAGTCAGCC
AAGTACAAACGCTGGGTAGCGTTGAGGCAGTTGAAGATGAGCGTGTATTAACCACAGTAGATGAGCTGGATAGAGTGCTG
GGTGGCGGTGTGGTCAAGGGCGGTGTCGTGCTTATTGGCGGCGACCCTGGGGTGGGTAAATCAACCTTGCTGCTACAGGC
GTTGACCGCCATGAGCCAGCAGCACAAAACCTTATATGTCAGTGGTGAAGAATCCGCCCGTCAAATCGCGCTGAGAGCGA
ATCGCTTGCAACTGGATGGCGAAAAGCTGGAACTGCTAGCTGAAATTCAATTAGAAAAAATACTTGCGACCCTGCAAGCA
CACCAGCCATTTATCGCAGTAATCGACTCCATACAAACAGTATATTCCGAGGCATTGCAATCTGCACCCGGCTCGGTGGC
ACAGGTGCGTGAGTGTGCGGCACAATTAACACGATTCGCTAAACAAAGCGGTACCGTGATATTTCTTGTTGGGCATGTAA
CCAAGGAAGGTGCCTTGGCTGGGCCACGCGTGCTGGAGCATATTGTTGATACTGTGTTGTATTTTGAAGGCGACACCAGC
TCGACTTTCCGTCTGGTACGCGCAATTAAGAATCGCTTTGGGGCGGTGAACGAGCTAGGCGTGTTCGCCATGACAGATAA
GGGATTGAAAGGTGTTTCCAATCCTTCCGCTATTTTTCTGTCTGGCCACCGCTCTGATGTGCCGGGGTCGTGCGTCATGG
TGACGCAAGAGGGTACACGACCGTTATTAGTGGAAATTCAAGCTTTGGTTGAGTCTTCACCCATGCCGAATCCGCGTCGC
TTGTCAGTGGGTCTTGAACAAAACAGGCTGGCTATGTTATTAGCTGTATTGCATCGCCATGCTGGCTTGGCCTGCCATGA
TCAGGATGTATTTATCAACGCGGTCGGTGGTGTGCGTATCAATGAACCAGCTGCTGATTTACCTCTGTTACTGGCCATAG
TTTCATCTTTTAAAAACAAAGCGATGCCAGACAAACTTGTTGTATTTGGTGAGGTTGGTTTGGCGGGTGAAATTCGTCCT
GTGCAACGCGGGCAAGAGCGTCTGCGTGAAGCCGCAAAACTGGGTTTTACGCTGGCGATTGTGCCCATTGCCAATAAACC
TCGTCAGGCTATTGCTGGGATGGAGGTTATTGGTGTGGAGCGTTTGCAGGATGCTGTGACTTATCTTAGGGATGCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809S9L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.496
  radA Streptococcus pneumoniae Rx1

46.578

100

0.467
  radA Streptococcus pneumoniae D39

46.578

100

0.467
  radA Streptococcus pneumoniae R6

46.578

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.578

100

0.467
  radA Streptococcus mitis SK321

46.578

100

0.467
  radA Streptococcus mitis NCTC 12261

46.358

100

0.465

Multiple sequence alignment