Detailed information NTG0752317

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: OKW88_RS20820
• Genome accession: NZ_CP110105
• Coordinates: 4049030..4049983 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain CF03
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 4044030..4054983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OKW88_RS20795 (OKW88_20760)	argF	4045863..4046822 (+)	960	WP_229762431.1	ornithine carbamoyltransferase	-
OKW88_RS20800 (OKW88_20765)	yjzC	4046908..4047087 (+)	180	WP_003245356.1	YjzC family protein	-
OKW88_RS20805 (OKW88_20770)	yjzD	4047133..4047318 (-)	186	WP_003245236.1	YjzD family protein	-
OKW88_RS20810 (OKW88_20775)	-	4047567..4048301 (+)	735	WP_033883595.1	hypothetical protein	-
OKW88_RS20815 (OKW88_20780)	-	4048383..4048940 (+)	558	WP_038428783.1	hypothetical protein	-
OKW88_RS20820 (OKW88_20785)	med	4049030..4049983 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
OKW88_RS20825 (OKW88_20790)	comZ	4049998..4050189 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
OKW88_RS20830 (OKW88_20795)	yjzB	4050219..4050458 (-)	240	WP_003232972.1	spore coat protein YjzB	-
OKW88_RS20835 (OKW88_20800)	fabH	4050623..4051561 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
OKW88_RS20840 (OKW88_20805)	fabF	4051584..4052825 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
OKW88_RS20845 (OKW88_20810)	yjaZ	4052901..4053686 (+)	786	WP_014479439.1	DUF2268 domain-containing protein	-
OKW88_RS20850 (OKW88_20815)	appD	4053878..4054864 (+)	987	WP_131227309.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=752317 OKW88_RS20820 WP_014476425.1 4049030..4049983(+) (med) [Bacillus subtilis strain CF03]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=752317 OKW88_RS20820 WP_014476425.1 4049030..4049983(+) (med) [Bacillus subtilis strain CF03]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997