Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   OKW88_RS19290 Genome accession   NZ_CP110105
Coordinates   3768025..3768819 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3763025..3773819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS19260 (OKW88_19235) sxzA 3763864..3764895 (+) 1032 WP_015715532.1 iron chelate uptake ABC transporter family permease subunit -
  OKW88_RS19265 (OKW88_19240) yfhB 3765010..3765891 (+) 882 WP_326227379.1 PhzF family phenazine biosynthesis isomerase -
  OKW88_RS19270 (OKW88_19245) yfhC 3765979..3766563 (+) 585 WP_326227380.1 nitroreductase -
  OKW88_RS19275 (OKW88_19250) yfhD 3766602..3766793 (-) 192 WP_003233561.1 YfhD family protein -
  OKW88_RS19280 (OKW88_19255) yfhE 3766860..3766970 (-) 111 WP_003223230.1 YfhE family protein -
  OKW88_RS19285 (OKW88_19260) yfhF 3767025..3767936 (-) 912 WP_342006813.1 TIGR01777 family oxidoreductase -
  OKW88_RS19290 (OKW88_19265) recX 3768025..3768819 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  OKW88_RS19295 (OKW88_19270) yfhH 3768821..3769141 (+) 321 WP_029726843.1 YfhH family protein -
  OKW88_RS19300 (OKW88_19275) yfhI 3769278..3770471 (+) 1194 WP_072692836.1 MFS transporter -
  OKW88_RS19305 (OKW88_19280) sspK 3770503..3770655 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  OKW88_RS19310 (OKW88_19285) yfhJ 3770780..3771049 (+) 270 WP_003243789.1 YfhJ family protein -
  OKW88_RS19315 (OKW88_19290) yfhK 3771194..3771712 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  OKW88_RS19320 (OKW88_19295) spdL 3771797..3772129 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  OKW88_RS19325 (OKW88_19300) ephM 3772116..3772976 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=752309 OKW88_RS19290 WP_029726844.1 3768025..3768819(+) (recX) [Bacillus subtilis strain CF03]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=752309 OKW88_RS19290 WP_029726844.1 3768025..3768819(+) (recX) [Bacillus subtilis strain CF03]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996