Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   OKW88_RS16685 Genome accession   NZ_CP110105
Coordinates   3236623..3237021 (-) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231623..3242021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS16650 (OKW88_16615) - 3232502..3232690 (+) 189 Protein_3243 hypothetical protein -
  OKW88_RS16655 (OKW88_16620) - 3232726..3233041 (+) 316 Protein_3244 RDD family protein -
  OKW88_RS16660 (OKW88_16625) yckD 3233123..3233455 (+) 333 WP_015252849.1 YckD family protein -
  OKW88_RS16665 (OKW88_16630) - 3233583..3234005 (+) 423 WP_174616579.1 MarR family winged helix-turn-helix transcriptional regulator -
  OKW88_RS16670 (OKW88_16635) - 3233993..3234334 (+) 342 WP_032724911.1 DUF3147 family protein -
  OKW88_RS16675 (OKW88_16640) - 3234353..3235080 (+) 728 Protein_3248 AAA family ATPase -
  OKW88_RS16680 (OKW88_16645) bglC 3235153..3236586 (+) 1434 WP_407567927.1 6-phospho-beta-glucosidase -
  OKW88_RS16685 (OKW88_16650) nin/comJ 3236623..3237021 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  OKW88_RS16690 (OKW88_16655) nucA/comI 3237048..3237497 (-) 450 WP_033883649.1 DNA-entry nuclease Machinery gene
  OKW88_RS16695 (OKW88_16660) tlpC 3237665..3239386 (-) 1722 WP_076458400.1 methyl-accepting chemotaxis protein TlpC -
  OKW88_RS16700 (OKW88_16665) hxlB 3239497..3240054 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  OKW88_RS16705 (OKW88_16670) hxlA 3240060..3240692 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  OKW88_RS16710 (OKW88_16675) hxlR 3240924..3241286 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=752302 OKW88_RS16685 WP_015252845.1 3236623..3237021(-) (nin/comJ) [Bacillus subtilis strain CF03]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=752302 OKW88_RS16685 WP_015252845.1 3236623..3237021(-) (nin/comJ) [Bacillus subtilis strain CF03]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985