Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OKW88_RS14925 Genome accession   NZ_CP110105
Coordinates   2909109..2909399 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain CF03     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904109..2914399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS14885 (OKW88_14855) darA 2904136..2904465 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  OKW88_RS14890 (OKW88_14860) yaaR 2904478..2904918 (+) 441 WP_009966249.1 YaaR family protein -
  OKW88_RS14895 (OKW88_14865) holB 2904930..2905919 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  OKW88_RS14900 (OKW88_14870) ricT 2905922..2906749 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  OKW88_RS14905 (OKW88_14875) yabA 2906764..2907123 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  OKW88_RS14910 (OKW88_14880) trmNF 2907182..2907925 (+) 744 WP_003226765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  OKW88_RS14915 (OKW88_14885) yazA 2907912..2908211 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  OKW88_RS14920 (OKW88_14890) rsmI 2908186..2909064 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OKW88_RS14925 (OKW88_14895) abrB 2909109..2909399 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  OKW88_RS14930 (OKW88_14900) metG 2909894..2911888 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  OKW88_RS14935 (OKW88_14905) dayD 2911968..2912735 (+) 768 WP_014475570.1 TatD family hydrolase -
  OKW88_RS14940 (OKW88_14910) yabE 2912891..2914204 (+) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=752298 OKW88_RS14925 WP_003226760.1 2909109..2909399(-) (abrB) [Bacillus subtilis strain CF03]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=752298 OKW88_RS14925 WP_003226760.1 2909109..2909399(-) (abrB) [Bacillus subtilis strain CF03]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1