Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   OKW88_RS07745 Genome accession   NZ_CP110105
Coordinates   1504172..1504918 (-) Length   248 a.a.
NCBI ID   WP_407568081.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499172..1509918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS07720 (OKW88_07710) mreC 1499578..1500450 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  OKW88_RS07725 (OKW88_07715) mreB 1500481..1501494 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  OKW88_RS07730 (OKW88_07720) radC 1501586..1502281 (-) 696 WP_407568080.1 DNA repair protein RadC -
  OKW88_RS07735 (OKW88_07725) maf 1502318..1502887 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  OKW88_RS07740 (OKW88_07730) spoIIB 1503040..1504038 (-) 999 WP_342006707.1 stage II sporulation protein SpoIIB -
  OKW88_RS07745 (OKW88_07735) comC 1504172..1504918 (-) 747 WP_407568081.1 prepilin peptidase Machinery gene
  OKW88_RS07750 (OKW88_07740) folC 1505057..1506349 (-) 1293 WP_407568082.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  OKW88_RS07755 (OKW88_07745) valS 1506410..1509052 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  OKW88_RS07760 (OKW88_07750) - 1509500..1509691 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=752275 OKW88_RS07745 WP_407568081.1 1504172..1504918(-) (comC) [Bacillus subtilis strain CF03]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPTELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=752275 OKW88_RS07745 WP_407568081.1 1504172..1504918(-) (comC) [Bacillus subtilis strain CF03]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCTCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTACAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCATATTTATACGGAGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992