Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OKW88_RS06330 Genome accession   NZ_CP110105
Coordinates   1267959..1268726 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain CF03     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1262959..1273726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS06310 (OKW88_06295) ppsR 1263134..1263946 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  OKW88_RS06315 (OKW88_06300) ccpN 1263972..1264610 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  OKW88_RS06320 (OKW88_06305) glyS 1264743..1266782 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  OKW88_RS06325 (OKW88_06310) glyQ 1266775..1267662 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  OKW88_RS06330 (OKW88_06315) recO 1267959..1268726 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  OKW88_RS06335 (OKW88_06320) yqzL 1268763..1268906 (-) 144 WP_003230053.1 YqzL family protein -
  OKW88_RS06340 (OKW88_06325) era 1269054..1269959 (-) 906 WP_003230051.1 GTPase Era -
  OKW88_RS06345 (OKW88_06330) - 1269940..1270350 (-) 411 WP_032722130.1 cytidine deaminase -
  OKW88_RS06350 (OKW88_06335) unpK 1270469..1270840 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  OKW88_RS06355 (OKW88_06340) ybeY 1270821..1271294 (-) 474 WP_342006568.1 rRNA maturation RNase YbeY -
  OKW88_RS06360 (OKW88_06345) pgpH 1271295..1273430 (-) 2136 WP_110109423.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=752267 OKW88_RS06330 WP_003230055.1 1267959..1268726(-) (recO) [Bacillus subtilis strain CF03]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=752267 OKW88_RS06330 WP_003230055.1 1267959..1268726(-) (recO) [Bacillus subtilis strain CF03]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1