Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   OKW88_RS05800 Genome accession   NZ_CP110105
Coordinates   1178065..1178868 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173065..1183868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS05775 (OKW88_05760) glpQB 1174204..1174935 (-) 732 WP_128441710.1 glycerophosphodiester phosphodiesterase -
  OKW88_RS05780 (OKW88_05765) yqiI 1175014..1175634 (-) 621 WP_076458098.1 N-acetylmuramoyl-L-alanine amidase -
  OKW88_RS05785 (OKW88_05770) - 1175654..1175950 (-) 297 WP_014480225.1 hypothetical protein -
  OKW88_RS05790 (OKW88_05775) - 1176257..1176409 (+) 153 WP_130572550.1 hypothetical protein -
  OKW88_RS05795 (OKW88_05780) yqiG 1176482..1177600 (+) 1119 WP_095843828.1 NADH-dependent flavin oxidoreductase -
  OKW88_RS05800 (OKW88_05785) spo0A 1178065..1178868 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  OKW88_RS05805 (OKW88_05790) spoIVB 1179144..1180424 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  OKW88_RS05810 (OKW88_05795) recN 1180599..1182329 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  OKW88_RS05815 (OKW88_05800) argR 1182366..1182815 (-) 450 WP_003230265.1 arginine repressor ArgR -
  OKW88_RS05820 (OKW88_05805) yqxC 1182913..1183758 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=752256 OKW88_RS05800 WP_003226427.1 1178065..1178868(-) (spo0A) [Bacillus subtilis strain CF03]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=752256 OKW88_RS05800 WP_003226427.1 1178065..1178868(-) (spo0A) [Bacillus subtilis strain CF03]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTACTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1