Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OKW88_RS04790 Genome accession   NZ_CP110105
Coordinates   997381..998001 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992381..1003001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS04750 (OKW88_04735) ptsA 993512..994018 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  OKW88_RS04755 (OKW88_04740) ypqA 994156..994575 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  OKW88_RS04760 (OKW88_04745) sppG 994596..994973 (-) 378 WP_004398696.1 YppG family protein -
  OKW88_RS04765 (OKW88_04750) yppF 995161..995349 (+) 189 WP_003230690.1 YppF family protein -
  OKW88_RS04770 (OKW88_04755) yppE 995388..995759 (-) 372 WP_003246080.1 YppE family protein -
  OKW88_RS04775 (OKW88_04760) yppD 995805..996050 (-) 246 WP_004398488.1 YppD family protein -
  OKW88_RS04780 (OKW88_04765) sspM 996249..996353 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  OKW88_RS04785 (OKW88_04770) yppC 996378..997340 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  OKW88_RS04790 (OKW88_04775) recU 997381..998001 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  OKW88_RS04795 (OKW88_04780) ponA 998023..1000767 (+) 2745 WP_407568068.1 PBP1A family penicillin-binding protein -
  OKW88_RS04800 (OKW88_04785) ypoC 1000843..1001337 (-) 495 WP_029726783.1 YpoC family protein -
  OKW88_RS04805 (OKW88_04790) nth 1001334..1001993 (-) 660 WP_009967580.1 endonuclease III -
  OKW88_RS04810 (OKW88_04795) dnaD 1002012..1002710 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=752255 OKW88_RS04790 WP_004399067.1 997381..998001(+) (recU) [Bacillus subtilis strain CF03]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=752255 OKW88_RS04790 WP_004399067.1 997381..998001(+) (recU) [Bacillus subtilis strain CF03]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1