Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OKW88_RS03980 Genome accession   NZ_CP110105
Coordinates   865586..866716 (+) Length   376 a.a.
NCBI ID   WP_131227504.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 853232..868410 865586..866716 within 0


Gene organization within MGE regions


Location: 853232..868410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS03885 (OKW88_03875) - 853232..854101 (-) 870 WP_342006591.1 hypothetical protein -
  OKW88_RS03890 (OKW88_03880) - 854124..854633 (-) 510 WP_131227494.1 super-infection exclusion protein B -
  OKW88_RS03895 (OKW88_03885) - 854654..855142 (-) 489 WP_131227495.1 hypothetical protein -
  OKW88_RS03900 (OKW88_03890) - 855191..856075 (-) 885 WP_131227496.1 DUF5677 domain-containing protein -
  OKW88_RS03905 (OKW88_03895) - 856155..856370 (-) 216 WP_124048211.1 hypothetical protein -
  OKW88_RS03910 (OKW88_03900) - 856401..856502 (+) 102 Protein_780 hypothetical protein -
  OKW88_RS03915 (OKW88_03905) - 856614..856844 (+) 231 WP_131227497.1 hypothetical protein -
  OKW88_RS03920 (OKW88_03910) - 856849..857241 (-) 393 WP_029727206.1 UPF0715 family protein -
  OKW88_RS03925 (OKW88_03915) - 857318..857515 (-) 198 WP_250622473.1 hypothetical protein -
  OKW88_RS03930 (OKW88_03920) - 857592..858701 (-) 1110 WP_131227498.1 AAA family ATPase -
  OKW88_RS03935 (OKW88_03925) - 858691..859466 (-) 776 Protein_785 DUF6414 family protein -
  OKW88_RS03940 - 859485..859742 (-) 258 Protein_786 helix-turn-helix domain-containing protein -
  OKW88_RS03945 (OKW88_03930) - 859729..860796 (-) 1068 WP_131227500.1 hypothetical protein -
  OKW88_RS03950 (OKW88_03935) - 861186..862091 (+) 906 WP_032725934.1 S8 family serine peptidase -
  OKW88_RS03955 (OKW88_03940) - 862111..863028 (+) 918 WP_051922667.1 SAR2788 family putative toxin -
  OKW88_RS03960 (OKW88_03945) - 863057..863422 (+) 366 WP_131227501.1 hypothetical protein -
  OKW88_RS03965 (OKW88_03950) - 863603..863899 (+) 297 Protein_791 SOS response-associated peptidase family protein -
  OKW88_RS03970 (OKW88_03955) - 864162..864527 (+) 366 WP_131227502.1 YoqO family protein -
  OKW88_RS03975 (OKW88_03960) - 865348..865452 (+) 105 WP_407568102.1 phage holin -
  OKW88_RS03980 (OKW88_03965) rapC 865586..866716 (+) 1131 WP_131227504.1 tetratricopeptide repeat protein Regulator
  OKW88_RS03985 (OKW88_03970) - 866706..866849 (+) 144 WP_153801665.1 hypothetical protein -
  OKW88_RS03990 (OKW88_03975) - 867003..867203 (-) 201 WP_021481449.1 hypothetical protein -
  OKW88_RS03995 (OKW88_03980) - 867426..867598 (-) 173 Protein_797 hypothetical protein -
  OKW88_RS04000 (OKW88_03985) - 867593..867748 (-) 156 Protein_798 T7SS effector LXG polymorphic toxin -
  OKW88_RS04005 (OKW88_03990) yobM 867847..868404 (-) 558 WP_029318053.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.10 Da        Isoelectric Point: 5.5275

>NTDB_id=752254 OKW88_RS03980 WP_131227504.1 865586..866716(+) (rapC) [Bacillus subtilis strain CF03]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDQKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=752254 OKW88_RS03980 WP_131227504.1 865586..866716(+) (rapC) [Bacillus subtilis strain CF03]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATCAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457