Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OKW88_RS02405 Genome accession   NZ_CP110105
Coordinates   479816..480595 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain CF03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 474816..485595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS02385 (OKW88_02385) trmFO 475509..476816 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OKW88_RS02390 (OKW88_02390) xerC 476884..477798 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  OKW88_RS02395 (OKW88_02395) clpQ 477811..478356 (+) 546 WP_076457719.1 ATP-dependent protease subunit ClpQ -
  OKW88_RS02400 (OKW88_02400) hslU 478373..479776 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  OKW88_RS02405 (OKW88_02405) codY 479816..480595 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OKW88_RS02410 (OKW88_02410) flgB 480975..481364 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  OKW88_RS02415 (OKW88_02415) flgC 481364..481816 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  OKW88_RS02420 (OKW88_02420) fliE 481827..482147 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  OKW88_RS02425 (OKW88_02425) fliF 482193..483803 (+) 1611 WP_342006628.1 flagellar basal-body MS-ring/collar protein FliF -
  OKW88_RS02430 (OKW88_02430) fliG 483816..484832 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  OKW88_RS02435 (OKW88_02435) fliH 484825..485577 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=752251 OKW88_RS02405 WP_003220850.1 479816..480595(+) (codY) [Bacillus subtilis strain CF03]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=752251 OKW88_RS02405 WP_003220850.1 479816..480595(+) (codY) [Bacillus subtilis strain CF03]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467