Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OKW88_RS01525 Genome accession   NZ_CP110105
Coordinates   278086..278364 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain CF03     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 273086..283364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS01505 (OKW88_01505) panEB 274274..275185 (+) 912 WP_033883805.1 ketopantoate reductase family protein -
  OKW88_RS01510 (OKW88_01510) ampS 275219..276451 (-) 1233 WP_003232341.1 aminopeptidase -
  OKW88_RS01515 (OKW88_01515) ykpC 276560..276694 (-) 135 WP_003238865.1 protein YkpC -
  OKW88_RS01520 (OKW88_01520) mreBH 276795..277802 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  OKW88_RS01525 (OKW88_01525) abrB 278086..278364 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  OKW88_RS01530 (OKW88_01530) kinC 278554..279840 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  OKW88_RS01535 (OKW88_01535) ykqA 279856..280683 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  OKW88_RS01540 (OKW88_01540) ktrC 280746..281411 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  OKW88_RS01545 (OKW88_01545) ade 281567..283300 (+) 1734 WP_407568047.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=752249 OKW88_RS01525 WP_003244728.1 278086..278364(+) (abrB) [Bacillus subtilis strain CF03]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=752249 OKW88_RS01525 WP_003244728.1 278086..278364(+) (abrB) [Bacillus subtilis strain CF03]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576