Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   OKW88_RS01405 Genome accession   NZ_CP110105
Coordinates   254009..254584 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 249009..259584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS01375 (OKW88_01375) dapD 249195..249905 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  OKW88_RS01380 (OKW88_01380) dapI 249975..251099 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  OKW88_RS01385 (OKW88_01385) ykuS 251161..251406 (+) 246 WP_003232382.1 YkuS family protein -
  OKW88_RS01390 (OKW88_01390) mscT 251443..252246 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  OKW88_RS01395 (OKW88_01395) ahpA 252483..253025 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  OKW88_RS01400 (OKW88_01400) ykuV 253097..253543 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  OKW88_RS01405 (OKW88_01405) rok 254009..254584 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  OKW88_RS01410 (OKW88_01410) cse15 254625..255590 (-) 966 WP_048654871.1 spore protein Cse15 -
  OKW88_RS01415 (OKW88_01415) mobA 255727..256326 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  OKW88_RS01420 (OKW88_01420) moeB 256377..257396 (+) 1020 WP_044052540.1 molybdopterin-synthase adenylyltransferase MoeB -
  OKW88_RS01425 (OKW88_01425) glp 257414..258706 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  OKW88_RS01430 (OKW88_01430) mobB 258667..259188 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=752248 OKW88_RS01405 WP_003232378.1 254009..254584(+) (rok) [Bacillus subtilis strain CF03]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=752248 OKW88_RS01405 WP_003232378.1 254009..254584(+) (rok) [Bacillus subtilis strain CF03]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1