Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   OKW88_RS01305 Genome accession   NZ_CP110105
Coordinates   238130..238594 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain CF03     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 233130..243594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS01285 (OKW88_01285) kinA 233597..235417 (+) 1821 WP_080529263.1 sporulation histidine kinase KinA -
  OKW88_RS01290 (OKW88_01290) dapX 235427..236608 (-) 1182 WP_014479654.1 aminotransferase A -
  OKW88_RS01295 (OKW88_01295) - 236810..236971 (-) 162 WP_003245246.1 hypothetical protein -
  OKW88_RS01300 (OKW88_01300) cheV 237175..238086 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  OKW88_RS01305 (OKW88_01305) kre 238130..238594 (-) 465 WP_003232406.1 YkyB family protein Regulator
  OKW88_RS01310 (OKW88_01310) ykuC 238720..240012 (-) 1293 WP_015252195.1 MFS transporter -
  OKW88_RS01315 (OKW88_01315) ltdD 240088..240582 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  OKW88_RS01320 (OKW88_01320) ppeE 240639..241499 (-) 861 WP_003232400.1 metallophosphoesterase -
  OKW88_RS01325 (OKW88_01325) fadH 241642..242406 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=752247 OKW88_RS01305 WP_003232406.1 238130..238594(-) (kre) [Bacillus subtilis strain CF03]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=752247 OKW88_RS01305 WP_003232406.1 238130..238594(-) (kre) [Bacillus subtilis strain CF03]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1