Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N6N63_RS07320 Genome accession   NZ_CP110098
Coordinates   1541247..1541873 (+) Length   208 a.a.
NCBI ID   WP_023311030.1    Uniprot ID   A0A1Z3N2L7
Organism   Enterobacter asburiae strain GDFQ9D152     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536247..1546873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6N63_RS07300 (N6N63_07305) - 1536647..1538407 (-) 1761 WP_023311027.1 Lon protease family protein -
  N6N63_RS07305 (N6N63_07310) matP 1538594..1539046 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  N6N63_RS07310 (N6N63_07315) ompA 1539110..1540165 (-) 1056 WP_023311028.1 porin OmpA -
  N6N63_RS07315 (N6N63_07320) sulA 1540520..1541029 (-) 510 WP_047174506.1 SOS-induced cell division inhibitor SulA -
  N6N63_RS07320 (N6N63_07325) sxy/tfoX 1541247..1541873 (+) 627 WP_023311030.1 TfoX/Sxy family DNA transformation protein Regulator
  N6N63_RS07325 (N6N63_07330) yccS 1541830..1543992 (-) 2163 WP_023311031.1 YccS family putative transporter -
  N6N63_RS07330 (N6N63_07335) - 1544012..1544458 (-) 447 WP_023311032.1 YccF domain-containing protein -
  N6N63_RS07335 (N6N63_07340) helD 1544582..1546636 (+) 2055 WP_223603872.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23906.46 Da        Isoelectric Point: 9.4588

>NTDB_id=752189 N6N63_RS07320 WP_023311030.1 1541247..1541873(+) (sxy/tfoX) [Enterobacter asburiae strain GDFQ9D152]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=752189 N6N63_RS07320 WP_023311030.1 1541247..1541873(+) (sxy/tfoX) [Enterobacter asburiae strain GDFQ9D152]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTTCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTAACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGATGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAACGCTATCAGCGCCATCAACGAAACCGACTTAAGGATCTGCCAAACCTGACCTTTCAACTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCAATGAGGAAACGCTGCGGGCGCTGGGTGCAAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3N2L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567