Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OLM02_RS04205 Genome accession   NZ_CP110068
Coordinates   855548..857221 (+) Length   557 a.a.
NCBI ID   WP_010821560.1    Uniprot ID   -
Organism   Enterococcus faecalis strain BE13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850548..862221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLM02_RS04175 (OLM02_04175) - 851224..851454 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  OLM02_RS04180 (OLM02_04180) - 851454..852335 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  OLM02_RS04185 (OLM02_04185) - 852349..853164 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  OLM02_RS04190 (OLM02_04190) - 853528..854085 (+) 558 WP_002361405.1 matrixin family metalloprotease -
  OLM02_RS04195 (OLM02_04195) - 854149..854949 (+) 801 WP_025190179.1 hypothetical protein -
  OLM02_RS04200 (OLM02_04200) - 855081..855530 (+) 450 WP_002358881.1 arginine repressor -
  OLM02_RS04205 (OLM02_04205) recN 855548..857221 (+) 1674 WP_010821560.1 DNA repair protein RecN Machinery gene
  OLM02_RS04210 (OLM02_04210) - 857313..857423 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  OLM02_RS04215 (OLM02_04215) - 857491..858456 (-) 966 WP_002387038.1 magnesium transporter CorA family protein -
  OLM02_RS04220 (OLM02_04220) - 858701..859093 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  OLM02_RS04225 (OLM02_04225) mraZ 859327..859812 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  OLM02_RS04230 (OLM02_04230) rsmH 859827..860783 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  OLM02_RS04235 (OLM02_04235) ftsL 860800..861207 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62703.11 Da        Isoelectric Point: 4.5772

>NTDB_id=751960 OLM02_RS04205 WP_010821560.1 855548..857221(+) (recN) [Enterococcus faecalis strain BE13]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLTVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALTLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFFITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=751960 OLM02_RS04205 WP_010821560.1 855548..857221(+) (recN) [Enterococcus faecalis strain BE13]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAACAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTAATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAGGCGGCTCATCAACAAGCGTTGACTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTTGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTTTATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501