Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QFX50_RS12620 Genome accession   NZ_CP123740
Coordinates   2583583..2584323 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2578583..2589323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS12595 hemH 2579459..2580382 (-) 924 WP_000162881.1 ferrochelatase -
  QFX50_RS12600 hemE 2580440..2581477 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  QFX50_RS12605 - 2581467..2581577 (-) 111 WP_031866187.1 hypothetical protein -
  QFX50_RS12610 traP 2581740..2582243 (+) 504 WP_000737978.1 signal transduction protein TRAP -
  QFX50_RS12615 - 2582367..2583590 (-) 1224 WP_001245771.1 ABC transporter permease -
  QFX50_RS12620 pptA 2583583..2584323 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein Regulator
  QFX50_RS12625 - 2584457..2584879 (+) 423 WP_000004981.1 HIT family protein -
  QFX50_RS12630 - 2585021..2585386 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  QFX50_RS12635 - 2586119..2586676 (+) 558 WP_000477962.1 DUF3267 domain-containing protein -
  QFX50_RS12640 - 2586881..2587843 (+) 963 WP_000782121.1 foldase protein PrsA -
  QFX50_RS12645 yhaM 2587964..2588905 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=751762 QFX50_RS12620 WP_000216874.1 2583583..2584323(-) (pptA) [Staphylococcus aureus strain 2.3b]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=751762 QFX50_RS12620 WP_000216874.1 2583583..2584323(-) (pptA) [Staphylococcus aureus strain 2.3b]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACATATAGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAAACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545