Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QFX50_RS07465 Genome accession   NZ_CP123740
Coordinates   1513338..1514420 (+) Length   360 a.a.
NCBI ID   WP_001808057.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508338..1519420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS07445 - 1508709..1509779 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  QFX50_RS07450 - 1510097..1511152 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  QFX50_RS07455 - 1511323..1511964 (-) 642 WP_000192947.1 YigZ family protein -
  QFX50_RS07460 fakB1 1512108..1512974 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  QFX50_RS07465 comFA 1513338..1514420 (+) 1083 WP_001808057.1 DEAD/DEAH box helicase Machinery gene
  QFX50_RS07470 - 1514413..1515087 (+) 675 WP_001057965.1 ComF family protein -
  QFX50_RS07475 hpf 1515148..1515720 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QFX50_RS07480 secA 1516134..1518665 (+) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  QFX50_RS07485 - 1518707..1518811 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42049.57 Da        Isoelectric Point: 9.6803

>NTDB_id=751708 QFX50_RS07465 WP_001808057.1 1513338..1514420(+) (comFA) [Staphylococcus aureus strain 2.3b]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYIQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=751708 QFX50_RS07465 WP_001808057.1 1513338..1514420(+) (comFA) [Staphylococcus aureus strain 2.3b]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATATTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364