Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   QFX46_RS12235 Genome accession   NZ_CP123739
Coordinates   2406345..2407190 (-) Length   281 a.a.
NCBI ID   WP_001566903.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2401345..2412190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX46_RS12200 rpsR 2402330..2402572 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  QFX46_RS12205 ssbA 2402624..2403127 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  QFX46_RS12210 rpsF 2403148..2403444 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  QFX46_RS12215 - 2403688..2403879 (+) 192 WP_001052483.1 hypothetical protein -
  QFX46_RS12220 ychF 2403965..2405062 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  QFX46_RS12225 - 2405074..2405277 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  QFX46_RS12230 - 2405307..2406188 (-) 882 WP_001077603.1 mechanosensitive ion channel family protein -
  QFX46_RS12235 spo0J 2406345..2407190 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  QFX46_RS12240 - 2407854..2408957 (+) 1104 WP_304984552.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  QFX46_RS12245 metC 2408954..2410114 (+) 1161 WP_000175854.1 cystathionine beta-lyase MetC -
  QFX46_RS12250 - 2410083..2411924 (+) 1842 WP_000077320.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32869.88 Da        Isoelectric Point: 10.0091

>NTDB_id=751677 QFX46_RS12235 WP_001566903.1 2406345..2407190(-) (spo0J) [Staphylococcus aureus strain 2.5]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=751677 QFX46_RS12235 WP_001566903.1 2406345..2407190(-) (spo0J) [Staphylococcus aureus strain 2.5]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384