Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OLM07_RS04090 | Genome accession | NZ_CP110040 |
| Coordinates | 824630..825157 (+) | Length | 175 a.a. |
| NCBI ID | WP_063855925.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain BE45 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 814207..850722 | 824630..825157 | within | 0 |
Gene organization within MGE regions
Location: 814207..850722
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLM07_RS03995 (OLM07_03995) | - | 814207..815343 (-) | 1137 | WP_264547526.1 | site-specific integrase | - |
| OLM07_RS04000 (OLM07_04000) | - | 815469..816053 (-) | 585 | WP_002401949.1 | DUF4352 domain-containing protein | - |
| OLM07_RS04005 (OLM07_04005) | - | 816135..816557 (-) | 423 | WP_010729101.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OLM07_RS04010 (OLM07_04010) | - | 816575..816895 (-) | 321 | WP_128437535.1 | helix-turn-helix domain-containing protein | - |
| OLM07_RS04015 (OLM07_04015) | - | 817195..817962 (+) | 768 | WP_141426545.1 | phage antirepressor KilAC domain-containing protein | - |
| OLM07_RS04020 (OLM07_04020) | - | 817986..818189 (+) | 204 | WP_002296611.1 | helix-turn-helix domain-containing protein | - |
| OLM07_RS04025 (OLM07_04025) | - | 818205..818534 (+) | 330 | WP_141442174.1 | DUF771 domain-containing protein | - |
| OLM07_RS04030 (OLM07_04030) | - | 818592..818762 (+) | 171 | WP_010784067.1 | hypothetical protein | - |
| OLM07_RS04035 (OLM07_04035) | - | 818926..819339 (-) | 414 | WP_010784066.1 | hypothetical protein | - |
| OLM07_RS04040 (OLM07_04040) | - | 819417..820130 (+) | 714 | WP_264547527.1 | Rha family transcriptional regulator | - |
| OLM07_RS04045 (OLM07_04045) | - | 820141..820326 (+) | 186 | WP_002411350.1 | hypothetical protein | - |
| OLM07_RS04050 (OLM07_04050) | - | 820338..820511 (+) | 174 | WP_002364664.1 | hypothetical protein | - |
| OLM07_RS04055 (OLM07_04055) | - | 820711..820833 (+) | 123 | WP_002399179.1 | hypothetical protein | - |
| OLM07_RS04060 (OLM07_04060) | - | 820817..821296 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| OLM07_RS04065 (OLM07_04065) | - | 821308..822324 (+) | 1017 | WP_002381629.1 | AAA family ATPase | - |
| OLM07_RS04070 (OLM07_04070) | - | 822329..822970 (+) | 642 | WP_002401957.1 | putative HNHc nuclease | - |
| OLM07_RS04075 (OLM07_04075) | - | 822976..823461 (+) | 486 | WP_033598031.1 | hypothetical protein | - |
| OLM07_RS04080 (OLM07_04080) | - | 823481..824332 (+) | 852 | WP_141417322.1 | DNA replication protein | - |
| OLM07_RS04085 (OLM07_04085) | - | 824332..824640 (+) | 309 | WP_002381633.1 | MazG-like family protein | - |
| OLM07_RS04090 (OLM07_04090) | ssb | 824630..825157 (+) | 528 | WP_063855925.1 | single-stranded DNA-binding protein | Machinery gene |
| OLM07_RS04095 (OLM07_04095) | - | 825170..825499 (+) | 330 | WP_063855926.1 | hypothetical protein | - |
| OLM07_RS04100 (OLM07_04100) | - | 825519..825725 (+) | 207 | WP_002395813.1 | hypothetical protein | - |
| OLM07_RS04105 (OLM07_04105) | - | 825743..825991 (+) | 249 | WP_264547528.1 | hypothetical protein | - |
| OLM07_RS04110 (OLM07_04110) | - | 826202..826684 (+) | 483 | WP_104888323.1 | hypothetical protein | - |
| OLM07_RS04115 (OLM07_04115) | - | 826681..826941 (+) | 261 | WP_002399914.1 | hypothetical protein | - |
| OLM07_RS04120 (OLM07_04120) | - | 826934..827341 (+) | 408 | WP_264547529.1 | DUF1642 domain-containing protein | - |
| OLM07_RS04125 (OLM07_04125) | - | 827524..827733 (+) | 210 | WP_113848049.1 | hypothetical protein | - |
| OLM07_RS04130 (OLM07_04130) | - | 827734..828153 (+) | 420 | WP_002404562.1 | transcriptional regulator | - |
| OLM07_RS04135 (OLM07_04135) | - | 829867..830220 (+) | 354 | WP_064687107.1 | phBC6A51 family helix-turn-helix protein | - |
| OLM07_RS04140 (OLM07_04140) | - | 830210..831484 (+) | 1275 | WP_224798902.1 | PBSX family phage terminase large subunit | - |
| OLM07_RS04145 (OLM07_04145) | - | 831497..832972 (+) | 1476 | WP_141417316.1 | phage portal protein | - |
| OLM07_RS04150 (OLM07_04150) | - | 832947..833993 (+) | 1047 | WP_141417315.1 | phage head morphogenesis protein | - |
| OLM07_RS04155 (OLM07_04155) | - | 833996..834316 (+) | 321 | WP_104884664.1 | hypothetical protein | - |
| OLM07_RS04160 (OLM07_04160) | - | 834321..834617 (+) | 297 | WP_156189951.1 | hypothetical protein | - |
| OLM07_RS04165 (OLM07_04165) | - | 834622..834864 (+) | 243 | WP_141417314.1 | glutaredoxin domain-containing protein | - |
| OLM07_RS04170 (OLM07_04170) | - | 834868..835131 (+) | 264 | WP_077932911.1 | DUF6275 family protein | - |
| OLM07_RS04175 (OLM07_04175) | - | 835271..835897 (+) | 627 | WP_141417313.1 | DUF4355 domain-containing protein | - |
| OLM07_RS04180 (OLM07_04180) | - | 835911..836813 (+) | 903 | WP_104858705.1 | DUF5309 family protein | - |
| OLM07_RS04185 (OLM07_04185) | - | 836837..837073 (+) | 237 | WP_002372022.1 | hypothetical protein | - |
| OLM07_RS04190 (OLM07_04190) | - | 837082..837426 (+) | 345 | WP_224798886.1 | hypothetical protein | - |
| OLM07_RS04195 (OLM07_04195) | - | 837423..837800 (+) | 378 | WP_002404932.1 | hypothetical protein | - |
| OLM07_RS04200 (OLM07_04200) | - | 837793..838191 (+) | 399 | WP_002395884.1 | HK97 gp10 family phage protein | - |
| OLM07_RS04205 (OLM07_04205) | - | 838195..838569 (+) | 375 | WP_016634615.1 | DUF6838 family protein | - |
| OLM07_RS04210 (OLM07_04210) | - | 838570..839412 (+) | 843 | WP_264547530.1 | major tail protein | - |
| OLM07_RS04215 (OLM07_04215) | gpG | 839465..839818 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| OLM07_RS04220 (OLM07_04220) | - | 840067..842961 (+) | 2895 | WP_264547588.1 | tape measure protein | - |
| OLM07_RS04225 (OLM07_04225) | - | 842951..843685 (+) | 735 | WP_264547531.1 | phage tail protein | - |
| OLM07_RS04230 (OLM07_04230) | - | 843667..846474 (+) | 2808 | WP_264547532.1 | phage tail spike protein | - |
| OLM07_RS04235 (OLM07_04235) | - | 846493..847398 (+) | 906 | WP_264547533.1 | phage baseplate upper protein | - |
| OLM07_RS04240 (OLM07_04240) | - | 847395..847712 (+) | 318 | WP_264547534.1 | hypothetical protein | - |
| OLM07_RS04245 (OLM07_04245) | - | 847705..848022 (+) | 318 | WP_010823170.1 | hypothetical protein | - |
| OLM07_RS04250 (OLM07_04250) | - | 848022..848510 (+) | 489 | WP_264547535.1 | hypothetical protein | - |
| OLM07_RS04255 (OLM07_04255) | - | 848521..848841 (+) | 321 | WP_104874258.1 | hypothetical protein | - |
| OLM07_RS04260 (OLM07_04260) | - | 848843..848998 (+) | 156 | WP_002364192.1 | XkdX family protein | - |
| OLM07_RS04265 (OLM07_04265) | - | 849033..849254 (+) | 222 | WP_002406118.1 | hypothetical protein | - |
| OLM07_RS04270 (OLM07_04270) | - | 849247..849480 (+) | 234 | WP_264547536.1 | phage holin | - |
| OLM07_RS04275 (OLM07_04275) | - | 849481..850722 (+) | 1242 | WP_264547537.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19325.21 Da Isoelectric Point: 4.6968
>NTDB_id=751666 OLM07_RS04090 WP_063855925.1 824630..825157(+) (ssb) [Enterococcus faecalis strain BE45]
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=751666 OLM07_RS04090 WP_063855925.1 824630..825157(+) (ssb) [Enterococcus faecalis strain BE45]
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.989 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.865 |
100 |
0.589 |