Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QFX46_RS06630 Genome accession   NZ_CP123739
Coordinates   1242965..1244644 (+) Length   559 a.a.
NCBI ID   WP_000942210.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237965..1249644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX46_RS06600 - 1238818..1239180 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  QFX46_RS06605 nusB 1239240..1239629 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  QFX46_RS06610 xseA 1239646..1240983 (+) 1338 WP_304984507.1 exodeoxyribonuclease VII large subunit -
  QFX46_RS06615 - 1240976..1241206 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  QFX46_RS06620 - 1241184..1242065 (+) 882 WP_000183375.1 polyprenyl synthetase family protein -
  QFX46_RS06625 ahrC 1242497..1242949 (+) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  QFX46_RS06630 recN 1242965..1244644 (+) 1680 WP_000942210.1 DNA repair protein RecN Machinery gene
  QFX46_RS06635 lpdA 1244795..1246216 (+) 1422 WP_001291528.1 dihydrolipoyl dehydrogenase -
  QFX46_RS06640 - 1246232..1247224 (+) 993 WP_000568351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  QFX46_RS06645 - 1247224..1248207 (+) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  QFX46_RS06650 - 1248220..1249494 (+) 1275 WP_000406837.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64265.84 Da        Isoelectric Point: 4.7316

>NTDB_id=751632 QFX46_RS06630 WP_000942210.1 1242965..1244644(+) (recN) [Staphylococcus aureus strain 2.5]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=751632 QFX46_RS06630 WP_000942210.1 1242965..1244644(+) (recN) [Staphylococcus aureus strain 2.5]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATAGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAGTCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44