Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OLM52_RS12060 Genome accession   NZ_CP110008
Coordinates   2571039..2572400 (-) Length   453 a.a.
NCBI ID   WP_264548757.1    Uniprot ID   -
Organism   Flavobacterium sp. N2820     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2566039..2577400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLM52_RS12040 - 2566105..2566734 (+) 630 WP_264548753.1 hypothetical protein -
  OLM52_RS12045 mfd 2566817..2570080 (+) 3264 WP_413614428.1 transcription-repair coupling factor -
  OLM52_RS12050 - 2570292..2570771 (+) 480 WP_264548755.1 hypothetical protein -
  OLM52_RS12055 - 2570790..2570996 (-) 207 WP_264548756.1 hypothetical protein -
  OLM52_RS12060 radA 2571039..2572400 (-) 1362 WP_264548757.1 DNA repair protein RadA Machinery gene
  OLM52_RS12065 - 2572407..2573606 (-) 1200 WP_264548758.1 alpha/beta hydrolase-fold protein -
  OLM52_RS12070 - 2573647..2574609 (-) 963 WP_264548759.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  OLM52_RS12075 panD 2574611..2574961 (-) 351 WP_008255780.1 aspartate 1-decarboxylase -
  OLM52_RS12080 panC 2574975..2575823 (-) 849 WP_264548760.1 pantoate--beta-alanine ligase -
  OLM52_RS12085 - 2575931..2576737 (+) 807 WP_264548761.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49768.20 Da        Isoelectric Point: 6.0294

>NTDB_id=751533 OLM52_RS12060 WP_264548757.1 2571039..2572400(-) (radA) [Flavobacterium sp. N2820]
MSKVKTAFFCQNCGTQYSKWQGQCNACKEWNTIVEELVQKEEKVAWKTTSASSKAATKPLLIREIDTAQEIRLNTTDNEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRAERITSTGDNCYILTETKTQNIFRQI
LEIEPDIVIIDSIQTLHTDYIESSAGSISQIRECTAELIKYAKESNVPVLLIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVDNPSEILISHKDEQLSGTAIATTLEGMRPLMLEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNVTGGISVEDTAIDLAVVAAILSSNEDIAIAEGFCFAGEVGLSGEI
RPVNRIEQRIQEAEKLGFTTIFVSKHNKISLKNTGIKIVLVAKIEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=751533 OLM52_RS12060 WP_264548757.1 2571039..2572400(-) (radA) [Flavobacterium sp. N2820]
ATGAGTAAAGTAAAAACGGCTTTCTTTTGCCAAAATTGTGGTACCCAATATTCAAAATGGCAAGGACAATGTAACGCTTG
CAAAGAATGGAATACCATTGTAGAAGAATTGGTTCAAAAAGAAGAAAAAGTAGCTTGGAAAACCACAAGTGCCTCTTCAA
AAGCCGCAACTAAACCTTTACTGATTAGAGAAATAGATACCGCACAAGAAATCCGATTGAACACAACAGATAACGAGTTG
AATCGGGTTTTAGGTGGCGGATTGGTTCCGGGTTCCTTAACTTTGTTAGGTGGCGAACCAGGAATTGGAAAAAGTACATT
GCTGTTACAAATTGCTTTGAAATTACCTTACAAAACACTTTATGTTTCGGGTGAAGAAAGCCAAAAACAGATAAAAATGC
GTGCCGAACGTATTACCTCAACGGGCGATAATTGCTACATTTTAACCGAAACCAAAACCCAAAATATCTTTCGACAAATT
TTAGAAATTGAACCCGATATTGTCATTATCGATTCCATTCAAACGTTGCATACCGATTATATTGAATCGTCTGCGGGAAG
TATTTCTCAAATTAGAGAATGCACGGCGGAGTTGATTAAATATGCCAAAGAATCGAATGTGCCGGTTTTATTAATTGGAC
ACATTACCAAAGACGGCACCATCGCTGGCCCAAAGATTTTGGAACACATGGTCGATACCGTTTTACAATTTGAAGGCGAC
AGAAATCACGTTTATAGAATTTTACGTTCGTTAAAAAACCGTTTTGGTTCAACTGCCGAATTAGGTATTTACGAAATGCA
AGGTTCCGGTTTACGAGAAGTGGACAATCCTTCCGAAATTTTGATTTCTCATAAAGACGAGCAACTTTCTGGTACAGCCA
TTGCTACAACTTTAGAAGGCATGCGCCCGTTGATGTTGGAAATTCAAGCTTTAGTTAGCACCGCCGTTTATGGAACACCA
CAACGAAGCACTACAGGTTACAACGCTAAACGCTTAAACATGATTTTGGCCGTTTTAGAAAAACGTGCAGGTTTTAGATT
AGGCACAAAAGACGTGTTCTTAAACGTAACAGGTGGAATTTCAGTAGAAGACACCGCGATAGATTTAGCCGTTGTTGCCG
CTATTTTATCCTCAAACGAAGACATTGCCATTGCAGAAGGTTTTTGCTTTGCAGGAGAAGTAGGACTTTCAGGCGAGATT
AGACCCGTTAACCGTATTGAACAACGCATTCAAGAAGCCGAAAAATTAGGCTTTACTACCATTTTTGTTTCCAAACACAA
TAAAATTTCTCTAAAAAATACGGGAATTAAAATTGTTTTAGTGGCCAAGATTGAAGATGTGGTGAGTGAGTTGTTTGGGT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.684

100

0.49
  radA Streptococcus pneumoniae Rx1

48.684

100

0.49
  radA Streptococcus pneumoniae D39

48.684

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.684

100

0.49
  radA Streptococcus mitis SK321

48.352

100

0.486
  radA Streptococcus mitis NCTC 12261

48.352

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481