Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OU418_RS21135 Genome accession   NZ_CP123621
Coordinates   4063788..4064477 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain RLI2019     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4058788..4069477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS21115 (OU418_21125) yxeA 4059693..4060040 (-) 348 WP_021481023.1 YxeA family protein -
  OU418_RS21120 (OU418_21130) yxdM 4060054..4061922 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  OU418_RS21125 (OU418_21135) yxdL 4061897..4062670 (-) 774 WP_041850316.1 ABC transporter ATP-binding protein YxdL -
  OU418_RS21130 (OU418_21140) yxdK 4062814..4063791 (-) 978 WP_043940238.1 two-component system sensor histidine kinase YxdK -
  OU418_RS21135 (OU418_21145) braR 4063788..4064477 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  OU418_RS21140 (OU418_21150) iolJ 4064585..4065457 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  OU418_RS21145 (OU418_21155) iolI 4065478..4066314 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  OU418_RS21150 (OU418_21160) iolH 4066400..4067269 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  OU418_RS21155 (OU418_21165) iolG 4067289..4068323 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=751498 OU418_RS21135 WP_003243527.1 4063788..4064477(-) (braR) [Bacillus subtilis strain RLI2019]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=751498 OU418_RS21135 WP_003243527.1 4063788..4064477(-) (braR) [Bacillus subtilis strain RLI2019]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406