Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OLM46_RS04460 Genome accession   NZ_CP110000
Coordinates   1019733..1021094 (-) Length   453 a.a.
NCBI ID   WP_264534349.1    Uniprot ID   -
Organism   Flavobacterium sp. N2013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1014733..1026094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLM46_RS04445 - 1018022..1018402 (+) 381 WP_264534347.1 TraR/DksA family transcriptional regulator -
  OLM46_RS04450 - 1018519..1019121 (+) 603 WP_264534573.1 lipoprotein signal peptidase -
  OLM46_RS04455 - 1019179..1019589 (-) 411 WP_264534348.1 hypothetical protein -
  OLM46_RS04460 radA 1019733..1021094 (-) 1362 WP_264534349.1 DNA repair protein RadA Machinery gene
  OLM46_RS04470 - 1021377..1022144 (+) 768 WP_264534350.1 enoyl-CoA hydratase/isomerase family protein -
  OLM46_RS04475 - 1022154..1022321 (+) 168 WP_264534351.1 hypothetical protein -
  OLM46_RS04480 - 1022356..1022808 (+) 453 WP_264534352.1 6-pyruvoyl trahydropterin synthase family protein -
  OLM46_RS04485 - 1022819..1023574 (+) 756 WP_264534353.1 UDP-2,3-diacylglucosamine diphosphatase -
  OLM46_RS04490 - 1023615..1024229 (-) 615 WP_264534354.1 FMN-binding negative transcriptional regulator -
  OLM46_RS04495 - 1024232..1024591 (-) 360 WP_264534355.1 DUF2200 domain-containing protein -
  OLM46_RS04500 - 1024615..1025328 (-) 714 WP_264534356.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49820.31 Da        Isoelectric Point: 6.3741

>NTDB_id=751477 OLM46_RS04460 WP_264534349.1 1019733..1021094(-) (radA) [Flavobacterium sp. N2013]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIVQKQEKVAWKSEPKVAGKAPKPLRINEIDSTQEIRLDTTDNEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLSLPYKTLYVSGEESQKQIKMRAERITPNGDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTPGSISQIRETTAELIKFAKETNIPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTSEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMLEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNPGIKIRLVAKIEDVAGELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=751477 OLM46_RS04460 WP_264534349.1 1019733..1021094(-) (radA) [Flavobacterium sp. N2013]
ATGTCAAAAGTAAAAACCTCATTTTTCTGTCAAAACTGCGGTACGCAATATGCCAAATGGCAAGGGCAATGCAATGCCTG
TAAAGAATGGAATACCATTGCCGAAGAAATTGTTCAGAAACAAGAAAAAGTAGCTTGGAAAAGCGAACCGAAAGTTGCTG
GAAAAGCACCCAAACCTTTGCGAATCAATGAAATCGACTCTACTCAAGAAATTCGACTAGACACAACTGACAACGAACTC
AATCGCGTTTTAGGGGGCGGTATTGTTCCTGGATCTTTGATTCTTTTAGGCGGTGAACCGGGTATTGGAAAAAGTACACT
TTTGCTTCAAATTTCCCTCAGTTTACCTTATAAAACACTTTATGTTTCGGGTGAAGAAAGCCAAAAACAAATAAAAATGC
GCGCGGAACGCATTACCCCAAACGGCGATAATTGTTACATCTTAACCGAGACAAAAACTCAAAATATATTCAAGCAAATT
GAAGCCATTCAACCTGAAATTGTCATCATTGACTCCATTCAAACGCTTCACACTGATTATATCGAATCCACCCCAGGCAG
TATTTCTCAAATTAGAGAAACTACAGCTGAGTTGATTAAATTTGCTAAAGAAACCAATATTCCTGTCATTTTAATTGGAC
ATATTACCAAAGATGGTACCATAGCTGGGCCAAAGATTTTAGAACACATGGTTGATACCGTTTTGCAATTTGAAGGCGAC
CGAAATCATGTGTACCGCATTTTGCGTTCGCTAAAAAACCGATTTGGCTCTACTTCTGAAATTGGTATTTACGAAATGTT
GGGCAGCGGCTTGCGCGAAGTGTCCAACCCATCTGAGATTTTGATTTCGCACAAAGATGAAGAATTATCAGGAACTGCTA
TTGCTACTACCTTAGAAGGCATGCGACCTTTGATGCTCGAAATACAAGCTTTAGTAAGCACCGCTGTATATGGAACACCC
CAACGTAGCACGACGGGATACAATGCCAAAAGACTGAATATGATTTTGGCGGTTTTAGAAAAACGAGCTGGTTTCCGTTT
AGGAGCCAAAGACGTTTTCTTAAACGTAACGGGCGGAATCTCTGTGGACGACCCCGCTATCGATTTAGCAGTTGTAGCGG
CAATTTTGTCTTCCAATGAGGACATTCCTGTCAATAAAGATTTTTGTTTTGCTGGCGAAGTGGGTCTTTCAGGCGAAATT
AGACCTGTGAACCGTGTGGATCAACGCATTCAAGAAGCGGAAAAATTAGGGTTTTCTACCATTTTTGTATCCAAGTACAA
CAAAATCGCATTGAAAAATCCCGGAATTAAAATTCGTCTAGTAGCTAAAATTGAAGATGTGGCAGGAGAATTATTTGGGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.672

100

0.501
  radA Streptococcus mitis NCTC 12261

49.561

100

0.499
  radA Streptococcus pneumoniae Rx1

49.561

100

0.499
  radA Streptococcus pneumoniae TIGR4

49.561

100

0.499
  radA Streptococcus pneumoniae D39

49.561

100

0.499
  radA Streptococcus pneumoniae R6

49.561

100

0.499
  radA Bacillus subtilis subsp. subtilis str. 168

48.222

99.338

0.479