Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   OU418_RS16905 Genome accession   NZ_CP123621
Coordinates   3214439..3215299 (-) Length   286 a.a.
NCBI ID   WP_041850585.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3209439..3220299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS16870 (OU418_16870) mrpE 3209669..3210145 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  OU418_RS16875 (OU418_16875) mrpF 3210145..3210429 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  OU418_RS16880 (OU418_16880) mnhG 3210413..3210787 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  OU418_RS16885 (OU418_16885) yuxO 3210826..3211206 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  OU418_RS16890 (OU418_16890) comA 3211225..3211869 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  OU418_RS16895 (OU418_16895) comP 3211950..3214250 (-) 2301 WP_088300729.1 histidine kinase Regulator
  OU418_RS16900 (OU418_16900) comX 3214262..3214426 (-) 165 WP_015384519.1 competence pheromone ComX -
  OU418_RS16905 (OU418_16905) comQ 3214439..3215299 (-) 861 WP_041850585.1 polyprenyl synthetase family protein Regulator
  OU418_RS16910 (OU418_16910) degQ 3215483..3215623 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  OU418_RS16915 (OU418_16915) - 3215845..3215907 (+) 63 Protein_3275 hypothetical protein -
  OU418_RS16920 (OU418_16920) - 3216086..3216454 (+) 369 WP_041850584.1 hypothetical protein -
  OU418_RS16925 (OU418_16925) pdeH 3216430..3217659 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  OU418_RS16930 (OU418_16930) pncB 3217796..3219268 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  OU418_RS16935 (OU418_16935) pncA 3219284..3219835 (-) 552 WP_043940186.1 cysteine hydrolase family protein -

Sequence


Protein


Download         Length: 286 a.a.        Molecular weight: 32545.49 Da        Isoelectric Point: 4.8309

>NTDB_id=751475 OU418_RS16905 WP_041850585.1 3214439..3215299(-) (comQ) [Bacillus subtilis strain RLI2019]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFSQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYRGLYYLNNDFIQKKNTLAYLYLNKRFNAASAEILSWYENTELFLSLNSKQIK
EKLTEAGVVQYLLVMKHLSLQKLKKEIARLELQENKIKKLITGIIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=751475 OU418_RS16905 WP_041850585.1 3214439..3215299(-) (comQ) [Bacillus subtilis strain RLI2019]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTTCACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACTGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGCTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTACCGAGGTTTATATTATCTAAATAACGATTTTATTCAGAAGAAAAACACATTGGCATACTTATACTTAAATAAACGTT
TTAATGCAGCTTCTGCAGAAATCTTGAGTTGGTATGAAAATACTGAGTTGTTCTTATCATTGAATTCCAAACAAATAAAA
GAAAAATTAACTGAGGCAGGCGTAGTGCAATATTTACTTGTAATGAAACACTTGTCATTACAAAAACTAAAGAAAGAAAT
TGCTAGATTAGAATTGCAAGAGAATAAAATAAAAAAATTAATAACAGGAATCATAAAATAA

Domains


Predicted by InterProScan.

(39-197)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.423

99.301

0.451