Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   OU418_RS15910 Genome accession   NZ_CP123621
Coordinates   3029693..3030403 (-) Length   236 a.a.
NCBI ID   WP_041851103.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024693..3035403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS15890 (OU418_15890) cysK 3024745..3025680 (+) 936 WP_003229237.1 cysteine synthase A -
  OU418_RS15895 (OU418_15895) pepV 3025714..3027105 (-) 1392 WP_029318264.1 dipeptidase PepV -
  OU418_RS15900 (OU418_15900) pbuO 3027202..3028500 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  OU418_RS15905 (OU418_15905) ythQ 3028539..3029696 (-) 1158 WP_041851102.1 ABC transporter permease -
  OU418_RS15910 (OU418_15910) pptA 3029693..3030403 (-) 711 WP_041851103.1 ABC transporter ATP-binding protein Regulator
  OU418_RS15915 (OU418_15915) ytzE 3030693..3030914 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  OU418_RS15920 (OU418_15920) rsuA 3031036..3031755 (-) 720 WP_014480587.1 pseudouridine synthase -
  OU418_RS15925 (OU418_15925) murJ 3031824..3033458 (-) 1635 WP_041851104.1 lipid II flippase MurJ -
  OU418_RS15930 (OU418_15930) ytfP 3033662..3034924 (+) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.63 Da        Isoelectric Point: 5.3508

>NTDB_id=751471 OU418_RS15910 WP_041851103.1 3029693..3030403(-) (pptA) [Bacillus subtilis strain RLI2019]
MTNLLEASIEQAGYTSRNKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=751471 OU418_RS15910 WP_041851103.1 3029693..3030403(-) (pptA) [Bacillus subtilis strain RLI2019]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAATAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTACCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

44.248

95.763

0.424