Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCX16_RS11235 Genome accession   NZ_AP024730
Coordinates   2242569..2243039 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain 59574     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237569..2248039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS11215 coaW 2237878..2238681 (+) 804 WP_000862727.1 type II pantothenate kinase -
  OCX16_RS11220 - 2238811..2239482 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  OCX16_RS11225 - 2239881..2241074 (-) 1194 WP_000183726.1 hypothetical protein -
  OCX16_RS11230 - 2241074..2242258 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  OCX16_RS11235 luxS 2242569..2243039 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  OCX16_RS11240 - 2243191..2243541 (-) 351 WP_001024030.1 hypothetical protein -
  OCX16_RS11245 - 2243555..2244856 (-) 1302 WP_001242310.1 pyrimidine-nucleoside phosphorylase -
  OCX16_RS11250 deoC 2245137..2245799 (-) 663 WP_117201042.1 deoxyribose-phosphate aldolase -
  OCX16_RS11255 deoD 2246114..2246824 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  OCX16_RS11260 - 2246945..2247388 (-) 444 WP_117201044.1 Dps family protein -
  OCX16_RS11265 - 2247588..2248001 (-) 414 WP_001123300.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=75145 OCX16_RS11235 WP_000164421.1 2242569..2243039(+) (luxS) [Staphylococcus aureus strain 59574]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=75145 OCX16_RS11235 WP_000164421.1 2242569..2243039(+) (luxS) [Staphylococcus aureus strain 59574]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404