Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OLM48_RS07515 Genome accession   NZ_CP109996
Coordinates   1679332..1680693 (-) Length   453 a.a.
NCBI ID   WP_236458228.1    Uniprot ID   -
Organism   Flavobacterium sp. N1861     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1674332..1685693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLM48_RS07490 fabF 1674394..1675647 (+) 1254 WP_236458223.1 beta-ketoacyl-ACP synthase II -
  OLM48_RS07495 rnc 1675654..1676397 (+) 744 WP_236458224.1 ribonuclease III -
  OLM48_RS07500 - 1676512..1676985 (+) 474 WP_236458225.1 IPExxxVDY family protein -
  OLM48_RS07505 pyk 1676991..1678421 (+) 1431 WP_236458226.1 pyruvate kinase -
  OLM48_RS07510 - 1678457..1679215 (+) 759 WP_236458227.1 Bax inhibitor-1/YccA family membrane protein -
  OLM48_RS07515 radA 1679332..1680693 (-) 1362 WP_236458228.1 DNA repair protein RadA Machinery gene
  OLM48_RS07520 - 1680696..1681904 (-) 1209 WP_236458229.1 alpha/beta hydrolase -
  OLM48_RS07525 - 1681943..1682902 (-) 960 WP_236458230.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  OLM48_RS07530 panD 1682905..1683255 (-) 351 WP_236458231.1 aspartate 1-decarboxylase -
  OLM48_RS07535 panC 1683341..1684189 (-) 849 WP_236458232.1 pantoate--beta-alanine ligase -
  OLM48_RS07540 - 1684297..1685103 (+) 807 WP_236458233.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49964.54 Da        Isoelectric Point: 6.1938

>NTDB_id=751445 OLM48_RS07515 WP_236458228.1 1679332..1680693(-) (radA) [Flavobacterium sp. N1861]
MSKVKTSFFCQNCGTSFSKWQGQCHACKEWNTIAEEIIQKEEKKAWKTESNTVSKATKPLLIKEIDSTQEIRLNTTDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERIVPNSDNCYILTETKTQNIFKQI
QEMQPEIVIIDSIQTLHTDYIESSAGSISQIRECTAELIKFAKETNVPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGNGLREVDNPSEILISHKEESLSGTAIACTLEGMRPLMIEIQSLVSSAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGMKDVFLNVTGGISVDDTAIDLAVVAAILSSNEDIGIEEGFCFAGEVGLSGEI
RPVNRIDQRIQEAEKLGFTTILVSKHNKISIKNNIIKVVLVSKIEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=751445 OLM48_RS07515 WP_236458228.1 1679332..1680693(-) (radA) [Flavobacterium sp. N1861]
ATGAGTAAAGTTAAAACTTCTTTTTTTTGCCAAAATTGCGGAACTTCTTTTTCTAAATGGCAAGGACAGTGTCATGCATG
TAAAGAATGGAATACAATTGCAGAGGAAATTATTCAAAAAGAAGAGAAAAAAGCTTGGAAAACAGAATCTAACACCGTTT
CTAAAGCTACTAAGCCTTTACTCATAAAAGAAATTGATAGCACACAAGAAATTAGACTTAACACTACCGATGGAGAGTTA
AATAGAGTTCTTGGCGGTGGTCTTGTTCCTGGTTCTTTAACTCTTTTGGGAGGTGAACCTGGTATTGGAAAAAGTACATT
ATTACTTCAAATTTCTTTAAAACTACCTTACAAAACGCTTTACGTTTCTGGAGAAGAGAGTCAGAAACAAATAAAAATGC
GTGCAGAAAGAATAGTTCCAAATAGTGATAACTGCTATATTCTAACAGAAACCAAAACACAAAATATATTTAAACAAATT
CAGGAAATGCAACCTGAAATTGTTATTATAGATTCGATACAAACACTACACACTGATTATATTGAATCTTCTGCAGGAAG
CATCTCACAAATTAGAGAATGTACCGCAGAACTTATAAAATTTGCTAAAGAGACAAACGTTCCCGTAATTCTAATTGGTC
ATATTACAAAAGATGGAACAATTGCAGGTCCAAAGATATTAGAACACATGGTAGACACCGTCCTTCAATTTGAAGGCGAC
AGAAACCATGTTTACAGAATTCTTCGCTCTTTAAAAAATCGTTTTGGATCTACAGCAGAATTAGGCATTTATGAAATGCT
CGGCAACGGCTTAAGAGAAGTTGATAATCCGTCAGAAATATTAATCTCTCATAAAGAAGAATCACTTTCTGGAACCGCTA
TCGCTTGCACACTTGAAGGAATGCGTCCGTTAATGATAGAGATTCAGTCCCTTGTAAGTTCGGCTGTATATGGAACTCCA
CAACGAAGTACAACGGGCTACAATGCAAAACGATTAAATATGATTTTGGCTGTTTTAGAAAAAAGAGCAGGATTTCGACT
AGGAATGAAAGATGTTTTTCTTAATGTAACAGGAGGAATCTCTGTAGACGATACTGCAATTGATTTAGCAGTTGTTGCTG
CAATTTTATCATCTAATGAAGACATTGGTATAGAAGAAGGCTTTTGCTTTGCAGGAGAAGTTGGTTTATCTGGTGAAATT
AGACCCGTAAACCGAATTGACCAACGTATTCAAGAAGCTGAAAAACTAGGCTTTACTACTATTTTAGTTTCTAAACACAA
TAAAATATCCATCAAGAATAATATAATAAAGGTAGTTCTTGTTTCTAAAATTGAAGACGTTGTTAGTGAATTGTTTGGGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.246

100

0.486
  radA Streptococcus mitis SK321

48.246

100

0.486
  radA Streptococcus pneumoniae Rx1

48.246

100

0.486
  radA Streptococcus mitis NCTC 12261

48.246

100

0.486
  radA Streptococcus pneumoniae R6

48.246

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

50

94.923

0.475