Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   OU418_RS02385 Genome accession   NZ_CP123621
Coordinates   467548..467982 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain RLI2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462548..472982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS02355 (OU418_02355) ydaD 463196..464056 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  OU418_RS02360 (OU418_02360) lyxE 464072..464575 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  OU418_RS02365 (OU418_02365) ydaF 464663..465214 (+) 552 WP_041850710.1 GNAT family N-acetyltransferase -
  OU418_RS02370 (OU418_02370) ydaG 465292..465714 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  OU418_RS02375 (OU418_02375) amj 466220..467029 (+) 810 WP_003234394.1 lipid II flippase Amj -
  OU418_RS02380 (OU418_02380) ydzA 467073..467363 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  OU418_RS02385 (OU418_02385) lrpC 467548..467982 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  OU418_RS02390 (OU418_02390) topB 468047..470230 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  OU418_RS02395 (OU418_02395) ephJ 470433..471521 (+) 1089 WP_003246551.1 lipoprotein -
  OU418_RS02400 (OU418_02400) epsK 471502..472353 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=751373 OU418_RS02385 WP_003246585.1 467548..467982(+) (lrpC) [Bacillus subtilis strain RLI2019]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=751373 OU418_RS02385 WP_003246585.1 467548..467982(+) (lrpC) [Bacillus subtilis strain RLI2019]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1