Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OJ970_RS16215 Genome accession   NZ_CP109963
Coordinates   3243303..3243899 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae isolate NY13307     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3238511..3258779 3243303..3243899 within 0


Gene organization within MGE regions


Location: 3238511..3258779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ970_RS16200 (OJ970_16205) helD 3238511..3240565 (-) 2055 WP_002898429.1 DNA helicase IV -
  OJ970_RS16205 (OJ970_16210) - 3240690..3241136 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OJ970_RS16210 (OJ970_16215) yccS 3241154..3243289 (+) 2136 WP_002898422.1 YccS family putative transporter -
  OJ970_RS16215 (OJ970_16220) sxy/tfoX 3243303..3243899 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  OJ970_RS16220 (OJ970_16225) sulA 3244248..3244757 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  OJ970_RS16225 (OJ970_16230) ompA 3245110..3246180 (+) 1071 WP_062954987.1 porin OmpA -
  OJ970_RS16230 (OJ970_16235) matP 3246312..3246764 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OJ970_RS16235 (OJ970_16240) - 3246950..3248707 (+) 1758 WP_002898401.1 Lon protease family protein -
  OJ970_RS16240 (OJ970_16245) fabA 3248777..3249295 (+) 519 WP_002898398.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  OJ970_RS16245 (OJ970_16250) rmf 3249364..3249531 (-) 168 WP_002898396.1 ribosome modulation factor -
  OJ970_RS16250 (OJ970_16255) pqiC 3249785..3250348 (-) 564 WP_002898392.1 membrane integrity-associated transporter subunit PqiC -
  OJ970_RS16255 (OJ970_16260) pqiB 3250348..3251985 (-) 1638 WP_002898390.1 intermembrane transport protein PqiB -
  OJ970_RS16260 (OJ970_16265) pqiA 3251975..3253243 (-) 1269 WP_002898387.1 membrane integrity-associated transporter subunit PqiA -
  OJ970_RS16265 (OJ970_16270) - 3253258..3255165 (-) 1908 WP_004150837.1 ABC transporter ATP-binding protein -
  OJ970_RS16270 (OJ970_16275) rlmKL 3255178..3257283 (-) 2106 WP_004147847.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  OJ970_RS16275 (OJ970_16280) - 3257383..3257532 (+) 150 Protein_3207 MOSC N-terminal beta barrel domain-containing protein -
  OJ970_RS16280 (OJ970_16285) - 3257587..3258779 (+) 1193 WP_085955245.1 IS3-like element ISKpn18 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=751326 OJ970_RS16215 WP_004150836.1 3243303..3243899(-) (sxy/tfoX) [Klebsiella pneumoniae isolate NY13307]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=751326 OJ970_RS16215 WP_004150836.1 3243303..3243899(-) (sxy/tfoX) [Klebsiella pneumoniae isolate NY13307]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51