Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QFB78_RS16975 Genome accession   NZ_CP123593
Coordinates   3480717..3481322 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DJH_183sputum     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3475717..3486322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB78_RS16955 aes 3475754..3476713 (+) 960 WP_000801846.1 acetyl esterase -
  QFB78_RS16960 hemH 3476710..3477672 (-) 963 WP_001250088.1 ferrochelatase -
  QFB78_RS16965 adk 3477908..3478552 (-) 645 WP_001220233.1 adenylate kinase -
  QFB78_RS16970 htpG 3478733..3480607 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  QFB78_RS16975 recR 3480717..3481322 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QFB78_RS16980 ybaB 3481322..3481651 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QFB78_RS16985 dnaX 3481704..3483635 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QFB78_RS16990 apt 3483764..3484315 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QFB78_RS16995 ybaN 3484468..3484845 (-) 378 WP_001188905.1 DUF454 family protein -
  QFB78_RS17000 priC 3484915..3485442 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QFB78_RS17005 rsmS 3485456..3485617 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=751323 QFB78_RS16975 WP_001195025.1 3480717..3481322(-) (recR) [Escherichia coli strain DJH_183sputum]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=751323 QFB78_RS16975 WP_001195025.1 3480717..3481322(-) (recR) [Escherichia coli strain DJH_183sputum]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443