Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QFB78_RS14310 Genome accession   NZ_CP123593
Coordinates   2932977..2933606 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain DJH_183sputum     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2927977..2938606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB78_RS14295 helD 2928219..2930273 (-) 2055 WP_000420536.1 DNA helicase IV -
  QFB78_RS14300 yccF 2930396..2930842 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QFB78_RS14305 yccS 2930852..2933014 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QFB78_RS14310 sxy/tfoX 2932977..2933606 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QFB78_RS14315 sulA 2933825..2934334 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QFB78_RS14320 ompA 2934691..2935743 (+) 1053 WP_001361736.1 porin OmpA -
  QFB78_RS14325 matP 2935819..2936271 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QFB78_RS14330 ycbZ 2936457..2938217 (+) 1761 WP_193329223.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=751316 QFB78_RS14310 WP_000839153.1 2932977..2933606(-) (sxy/tfoX) [Escherichia coli strain DJH_183sputum]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=751316 QFB78_RS14310 WP_000839153.1 2932977..2933606(-) (sxy/tfoX) [Escherichia coli strain DJH_183sputum]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1