Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QFB77_RS16075 Genome accession   NZ_CP123592
Coordinates   2933685..2934314 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain DJH_137urine     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2928685..2939314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB77_RS16060 helD 2928927..2930981 (-) 2055 WP_000420536.1 DNA helicase IV -
  QFB77_RS16065 yccF 2931104..2931550 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QFB77_RS16070 yccS 2931560..2933722 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QFB77_RS16075 sxy/tfoX 2933685..2934314 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QFB77_RS16080 sulA 2934533..2935042 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QFB77_RS16085 ompA 2935399..2936451 (+) 1053 WP_001361736.1 porin OmpA -
  QFB77_RS16090 matP 2936527..2936979 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QFB77_RS16095 ycbZ 2937165..2938925 (+) 1761 WP_193329223.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=751235 QFB77_RS16075 WP_000839153.1 2933685..2934314(-) (sxy/tfoX) [Escherichia coli strain DJH_137urine]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=751235 QFB77_RS16075 WP_000839153.1 2933685..2934314(-) (sxy/tfoX) [Escherichia coli strain DJH_137urine]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1