Detailed information NTG0751209

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QFB77_RS06950
• Genome accession: NZ_CP123592
• Coordinates: 1062254..1063246 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DJH_137urine
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1057254..1068246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFB77_RS06920	ispD	1057315..1058025 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QFB77_RS06925	ispF	1058025..1058504 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QFB77_RS06930	truD	1058501..1059550 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QFB77_RS06935	surE	1059531..1060292 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
QFB77_RS06940	pcm	1060286..1060912 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QFB77_RS06945	nlpD	1061097..1062191 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QFB77_RS06950	rpoS	1062254..1063246 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QFB77_RS06955	ygbN	1063340..1064704 (-)	1365	WP_000104456.1	GntP family transporter	-
QFB77_RS06960	ygbM	1064793..1065569 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QFB77_RS06965	ygbL	1065574..1066212 (-)	639	WP_001278994.1	aldolase	-
QFB77_RS06970	otnK	1066209..1067471 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=751209 QFB77_RS06950 WP_000081550.1 1062254..1063246(+) (rpoS) [Escherichia coli strain DJH_137urine]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=751209 QFB77_RS06950 WP_000081550.1 1062254..1063246(+) (rpoS) [Escherichia coli strain DJH_137urine]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715