Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A6764_RS13630 Genome accession   NZ_CP109943
Coordinates   2748690..2750420 (-) Length   576 a.a.
NCBI ID   WP_065066229.1    Uniprot ID   -
Organism   Brevibacillus sp. WF146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2743690..2755420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6764_RS13605 (A6764_13605) - 2743707..2744210 (-) 504 WP_065066232.1 hypothetical protein -
  A6764_RS13610 (A6764_13610) spo0A 2744405..2745193 (-) 789 WP_029099484.1 sporulation transcription factor Spo0A -
  A6764_RS13615 (A6764_13615) - 2745236..2745580 (+) 345 WP_264622254.1 hypothetical protein -
  A6764_RS13620 (A6764_13620) spoIVB 2745643..2746974 (-) 1332 WP_065066230.1 SpoIVB peptidase -
  A6764_RS13625 (A6764_13625) - 2747238..2748575 (+) 1338 Protein_2671 IS1182 family transposase -
  A6764_RS13630 (A6764_13630) recN 2748690..2750420 (-) 1731 WP_065066229.1 DNA repair protein RecN Machinery gene
  A6764_RS13635 (A6764_13635) ahrC 2750436..2750885 (-) 450 WP_029099480.1 transcriptional regulator AhrC/ArgR -
  A6764_RS13640 (A6764_13640) - 2750891..2751748 (-) 858 WP_029099479.1 NAD(+)/NADH kinase -
  A6764_RS13645 (A6764_13645) - 2751860..2752672 (-) 813 WP_065066228.1 TlyA family RNA methyltransferase -
  A6764_RS13650 (A6764_13650) dxs 2752669..2754555 (-) 1887 WP_065066227.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64909.93 Da        Isoelectric Point: 4.7608

>NTDB_id=751138 A6764_RS13630 WP_065066229.1 2748690..2750420(-) (recN) [Brevibacillus sp. WF146]
MLLELSIRNFAIIKSVTISFQRGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGETRAEVEGLFELPAGHPALALC
ESFGVAVEQDGTLVVRRDISSQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGEAELGAAK
REYGQLYAAYSKTRQDLERMARNERELVQRIDLLQYQLNEIEAAALTPGEDEKLLQQRKKWMNIEKVYAGIQDAYRALYG
DQRGLDWLGHAMSELERIAPYEEQLAPIVEVVQSAYYQMEDVAQQLRQLSDQLDFEPEQLAEVERRLDQIQNLKRKYGKN
VDDILEYAAAIQDELDEMQHYEDRLQQLEHRLTELAADLAVEALELSVIRRECAERLAREIEQQLKDLHMERARFAIDVR
RVPDEDGIELEGAKWRVDANGIDQVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTLIFDEVDTGVSG
RAAQAIAEKLARVAQKRQVLCITHLPQVASLADAHFLIRKEMSEHETMTVVQRLSDEERVKELARMLGGAEVTAKTEEHA
REMILLGQQRKAVNGD

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=751138 A6764_RS13630 WP_065066229.1 2748690..2750420(-) (recN) [Brevibacillus sp. WF146]
ATGCTGTTGGAACTGTCCATTCGCAATTTTGCCATCATCAAATCGGTCACGATTTCCTTTCAACGGGGACTGAACATCCT
CACGGGGGAGACCGGAGCCGGGAAGTCGATCATCATCGACGCGCTCGGCCTGCTCCTGGGCGGACGAGCTTCCGCCGACT
TTGTCCGGTACGGGGAGACGCGGGCCGAAGTGGAAGGGCTGTTTGAACTGCCCGCCGGCCACCCGGCGCTGGCGCTGTGC
GAGAGCTTCGGCGTCGCCGTGGAGCAGGACGGCACGCTGGTCGTGCGCCGCGACATCTCCAGCCAGGGCAAGAGCATCAT
CCGCATCAACGGCCAGTTGGTCACCCTGGCGATGCTGCGGGAGCTGGGGCCGTGGCTGGTGACCGTGCACGGCCAGCACG
ACACCCACATGCTGATGCAGGCGGATAAGCACATCAACTGGCTGGACGCGTACGGCGAAGCGGAGCTGGGCGCGGCCAAG
CGGGAGTACGGCCAGCTCTATGCCGCCTACAGCAAGACCAGACAGGACCTGGAGCGGATGGCCCGCAACGAGCGTGAGCT
GGTGCAGCGGATCGATTTGCTTCAATACCAGTTGAACGAGATCGAAGCGGCCGCCCTGACGCCGGGTGAAGACGAGAAAC
TGCTCCAGCAGCGGAAAAAATGGATGAACATCGAAAAGGTGTACGCCGGCATTCAGGATGCCTATCGCGCCCTGTACGGG
GATCAGCGCGGATTGGACTGGCTCGGCCACGCGATGAGCGAGCTGGAGCGGATCGCGCCGTACGAGGAGCAGCTCGCGCC
GATTGTGGAAGTGGTCCAGAGCGCATACTACCAGATGGAAGACGTGGCGCAGCAGCTTCGTCAGCTCAGCGACCAGCTTG
ACTTCGAACCGGAGCAGTTGGCGGAAGTGGAGCGGCGGCTTGACCAGATCCAGAACCTGAAGCGCAAGTACGGCAAAAAC
GTGGACGACATTCTGGAGTACGCCGCCGCGATCCAGGACGAGCTGGACGAGATGCAGCACTACGAGGATCGCCTGCAGCA
GTTGGAGCACCGGCTGACCGAGCTGGCGGCCGATCTGGCCGTGGAAGCGCTGGAACTGTCCGTGATCCGCCGCGAATGCG
CCGAGCGGCTGGCTCGGGAGATCGAGCAGCAGTTGAAAGATCTGCACATGGAACGGGCCCGTTTCGCCATCGACGTCCGC
CGGGTGCCGGATGAGGACGGGATTGAGCTGGAAGGGGCCAAATGGCGCGTCGATGCAAACGGAATCGATCAGGTGGAGTT
TCTCATCTCCCCCAACCCGGGCGAGCCGCTCCGGCCGCTGGCCAAGATCGCGTCCGGCGGCGAACTGTCCCGGGTCATGC
TGGCGATCAAGACGATCCTGGCCGGTACGGATCAGGTCCAGACGCTGATCTTCGACGAAGTGGACACCGGCGTGAGCGGC
AGGGCCGCCCAGGCGATCGCGGAGAAACTGGCCCGCGTGGCACAAAAGCGGCAGGTCCTCTGCATCACCCATCTGCCGCA
GGTGGCATCGCTGGCCGACGCGCATTTTCTGATCCGCAAGGAAATGAGCGAGCACGAGACGATGACGGTCGTCCAGCGCC
TCTCCGACGAAGAGCGCGTCAAGGAGCTGGCCCGGATGCTGGGCGGCGCCGAAGTCACGGCCAAAACCGAAGAACACGCC
CGCGAGATGATTCTGCTCGGGCAACAACGAAAAGCTGTCAACGGAGATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.826

100

0.498