Detailed information NTG0751124

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QEO95_RS08340
• Genome accession: NZ_CP123349
• Coordinates: 1647567..1648559 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AREA_R485
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1642567..1653559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEO95_RS08320 (QEO95_08300)	ygbM	1643205..1643981 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QEO95_RS08325 (QEO95_08305)	ygbN	1644070..1645434 (+)	1365	WP_000104433.1	GntP family transporter	-
QEO95_RS08330 (QEO95_08310)	-	1645577..1646620 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QEO95_RS08335 (QEO95_08315)	-	1646845..1647396 (+)	552	WP_001179444.1	flavodoxin family protein	-
QEO95_RS08340 (QEO95_08320)	rpoS	1647567..1648559 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QEO95_RS08345 (QEO95_08325)	nlpD	1648622..1649716 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QEO95_RS08350 (QEO95_08330)	pcm	1649901..1650527 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QEO95_RS08355 (QEO95_08335)	surE	1650521..1651282 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QEO95_RS08360 (QEO95_08340)	truD	1651263..1652312 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QEO95_RS08365 (QEO95_08345)	ispF	1652309..1652788 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QEO95_RS08370 (QEO95_08350)	ispD	1652788..1653498 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=751124 QEO95_RS08340 WP_000081550.1 1647567..1648559(-) (rpoS) [Escherichia coli strain AREA_R485]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=751124 QEO95_RS08340 WP_000081550.1 1647567..1648559(-) (rpoS) [Escherichia coli strain AREA_R485]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715