Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6764_RS00505 Genome accession   NZ_CP109943
Coordinates   72042..73409 (-) Length   455 a.a.
NCBI ID   WP_029101101.1    Uniprot ID   A0A553KGR6
Organism   Brevibacillus sp. WF146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67042..78409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6764_RS00480 (A6764_00480) ispD 67470..68162 (-) 693 WP_029101096.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  A6764_RS00485 (A6764_00485) - 68184..69275 (-) 1092 WP_029101097.1 PIN/TRAM domain-containing protein -
  A6764_RS00490 (A6764_00490) - 69567..69962 (+) 396 WP_029101098.1 hypothetical protein -
  A6764_RS00495 (A6764_00495) pssA 70120..70848 (-) 729 WP_035296713.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  A6764_RS00500 (A6764_00500) disA 70956..72032 (-) 1077 WP_029101100.1 DNA integrity scanning diadenylate cyclase DisA -
  A6764_RS00505 (A6764_00505) radA 72042..73409 (-) 1368 WP_029101101.1 DNA repair protein RadA Machinery gene
  A6764_RS00510 (A6764_00510) - 73511..75961 (-) 2451 WP_029101102.1 ATP-dependent Clp protease ATP-binding subunit -
  A6764_RS00515 (A6764_00515) - 76041..77102 (-) 1062 WP_029101103.1 protein arginine kinase -
  A6764_RS00520 (A6764_00520) - 77124..77639 (-) 516 WP_029101104.1 UvrB/UvrC motif-containing protein -
  A6764_RS00525 (A6764_00525) - 77696..78160 (-) 465 WP_029101105.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49536.09 Da        Isoelectric Point: 6.5796

>NTDB_id=751116 A6764_RS00505 WP_029101101.1 72042..73409(-) (radA) [Brevibacillus sp. WF146]
MSKYKTKYACQECGYESPKWMGKCPGCSRWNTMVEEVAVKSSHRYELTVGGQRQEAMPLTQVASEEEPRLDTTIGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHQGFKVLYVSGEESAKQIKLRADRLGMNTPPMYVLAENDLELIEQHI
NQVDPHVLIIDSIQTVFHPAVQSAAGSVAQVREATAQLMRIAKGKGIATFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKERGLEEVGNPSEIFLAERPVGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRMATGVDHQRVAMIMAVLEKRMGLMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDQPTNPHDVVIGEVGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLEVPTGMDVIGISNIAEALDEVLRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=751116 A6764_RS00505 WP_029101101.1 72042..73409(-) (radA) [Brevibacillus sp. WF146]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCCAAATGGATGGGCAAATGTCCGGGGTG
CAGCCGTTGGAACACGATGGTCGAAGAAGTGGCGGTCAAATCGTCTCACCGGTACGAGCTGACGGTCGGCGGGCAGCGTC
AGGAAGCCATGCCGCTGACGCAGGTGGCCAGCGAGGAAGAACCGCGGCTGGATACGACGATCGGCGAACTGAACCGCGTG
TTGGGCGGCGGACTTGTTCCCGGGTCGCTGATTCTCGTCGGCGGGGATCCCGGGATCGGCAAATCGACCCTGCTGCTGCA
GACGTCTTTTGCGCTCGCCCATCAGGGGTTCAAAGTGCTGTACGTCTCCGGCGAGGAGTCGGCCAAGCAGATCAAGCTGC
GGGCCGACCGCCTGGGGATGAACACTCCGCCCATGTACGTGCTGGCGGAGAACGACTTGGAACTGATCGAACAGCATATT
AATCAGGTAGATCCGCATGTGTTGATTATTGACTCGATACAAACCGTGTTTCATCCCGCCGTTCAGTCCGCGGCGGGCAG
TGTGGCGCAGGTGCGGGAGGCGACCGCCCAGTTGATGCGCATTGCCAAGGGCAAGGGCATCGCCACCTTCATTGTCGGCC
ACGTGACCAAGGAAGGGTCCATCGCCGGTCCCCGCATGCTTGAGCACATGGTGGATGCCGTGCTCTACTTTGAAGGGGAG
CGGCACAACACCTTCCGTATCTTGCGGGCGGTGAAAAACCGCTTTGGCTCCACCAACGAGATCGGCATTTTTGAGATGAA
GGAACGGGGCTTGGAAGAGGTGGGCAATCCGTCGGAAATCTTTCTCGCGGAGCGGCCCGTCGGCGTGGCTGGTTCCACGG
TGGTGGCCAGCATGGAAGGAACGCGGCCGGTGCTGGTGGAACTGCAGGCGCTGGTGGCGCCCACCAGCTTTGTGACGCCG
CGGCGGATGGCGACCGGGGTGGACCACCAGCGCGTGGCCATGATCATGGCCGTGCTGGAAAAGCGCATGGGACTGATGCT
GCAAAACCAGGACGCGTACGTCAACGTGGCCGGCGGCGTGCGGCTGGATGAGCCGGCCGTCGATTTGGCGATTGCGGTCA
GCATCGCCAGCAGTTTCCGCGACCAGCCGACCAACCCGCACGACGTCGTCATCGGCGAAGTGGGGCTGACGGGCGAAGTG
CGGGGAGTTTCCCGGATCGAACAGCGGGTCAGGGAAGCCCACAAGCTGGGGTTCAAGCGGGTGATCATTCCGGAAAAGAA
CATCCGCGGCCTGGAAGTCCCGACCGGCATGGACGTAATCGGCATCAGCAACATCGCCGAAGCATTGGACGAGGTGCTAA
GGGGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553KGR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.249

100

0.677
  radA Streptococcus pneumoniae Rx1

58.278

99.56

0.58
  radA Streptococcus pneumoniae D39

58.278

99.56

0.58
  radA Streptococcus pneumoniae R6

58.278

99.56

0.58
  radA Streptococcus pneumoniae TIGR4

58.278

99.56

0.58
  radA Streptococcus mitis NCTC 12261

58.278

99.56

0.58
  radA Streptococcus mitis SK321

58.278

99.56

0.58