Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   OHM48_RS06430 Genome accession   NZ_CP109942
Coordinates   1303044..1303847 (-) Length   267 a.a.
NCBI ID   WP_012027300.1    Uniprot ID   -
Organism   Streptococcus suis strain ID35541     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1298044..1308847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM48_RS06410 (OHM48_06410) recR 1298328..1298924 (-) 597 WP_024399909.1 recombination mediator RecR -
  OHM48_RS06415 (OHM48_06415) pbp2b 1298933..1301002 (-) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  OHM48_RS06420 (OHM48_06420) - 1301094..1301828 (-) 735 WP_024399923.1 ATP-binding cassette domain-containing protein -
  OHM48_RS06425 (OHM48_06425) - 1301991..1302788 (-) 798 WP_264490787.1 ATP-binding cassette domain-containing protein -
  OHM48_RS06430 (OHM48_06430) vicX 1303044..1303847 (-) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator
  OHM48_RS06435 (OHM48_06435) micB 1303854..1305203 (-) 1350 WP_012027301.1 cell wall metabolism sensor histidine kinase VicK Regulator
  OHM48_RS06440 (OHM48_06440) micA 1305196..1305900 (-) 705 WP_004298854.1 response regulator YycF Regulator
  OHM48_RS06445 (OHM48_06445) - 1306094..1306855 (+) 762 WP_012027304.1 amino acid ABC transporter ATP-binding protein -
  OHM48_RS06450 (OHM48_06450) - 1306866..1307705 (+) 840 WP_105155824.1 transporter substrate-binding domain-containing protein -
  OHM48_RS06455 (OHM48_06455) - 1307720..1308418 (+) 699 WP_002935835.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29643.75 Da        Isoelectric Point: 5.7755

>NTDB_id=751098 OHM48_RS06430 WP_012027300.1 1303044..1303847(-) (vicX) [Streptococcus suis strain ID35541]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=751098 OHM48_RS06430 WP_012027300.1 1303044..1303847(-) (vicX) [Streptococcus suis strain ID35541]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGCCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCGCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCATCTTTGTAATGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768